BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0036.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311506|ref|YP_003775598.1| lipid-A-disaccharide synthase [...   573   e-165

>gi|300311506|ref|YP_003775598.1| lipid-A-disaccharide synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  573 bits (1477), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/390 (72%), Positives = 324/390 (83%), Gaps = 4/390 (1%)

Query: 6   VASSDNI----SIAMVAGESSGDLLASRLLSGLRPRLPDARLHGIGGPHMAEHGFVSDWP 61
           +ASS +I    SIA+VAGESSGDLL SRLL+G+R RLP+ RLHGIGG HM   GF SDWP
Sbjct: 1   MASSADITRRQSIALVAGESSGDLLGSRLLAGVRERLPEVRLHGIGGEHMMAQGFASDWP 60

Query: 62  MDKLTVRGLFEVVPRYRELKGIQNTLRDQLLAERPSVFIGIDYPGFNLGLEQQLRDAGIP 121
           MDKLTVRGLFEV+PRYRE+KGIQ+ LRD+LLA+RP VF+G+DYPGFNLGLE+QL+ AGIP
Sbjct: 61  MDKLTVRGLFEVIPRYREIKGIQDALRDKLLADRPDVFVGVDYPGFNLGLEEQLKKAGIP 120

Query: 122 TMHFIGPQIWAWRGGRIKKIARAVSHMLVIFPFEEEIYRKAGVPVTYVGHPLAEIIPMEP 181
           T+HFIGPQIWAWRG RIKKI RAVSHMLVIFPFEE IYR+AGVPVTYVGHPLAE+IP++P
Sbjct: 121 TIHFIGPQIWAWRGWRIKKIQRAVSHMLVIFPFEESIYRQAGVPVTYVGHPLAEVIPLQP 180

Query: 182 DQAGARAALGLQQDRRIVAILPGSRMSELKYNTVSFLGAARLLRQREPQLQFVAPMAGDK 241
           D  GAR  L L    R+VAILPGSRMSELK N   FL AARLL+QR+ QLQFV P+ GD+
Sbjct: 181 DTRGARQRLDLNGPGRVVAILPGSRMSELKQNGAGFLAAARLLKQRDAQLQFVTPIGGDR 240

Query: 242 QRAYFEQLIAETGAVDLGIHVVSGQSHAAMEAADAVLVASGTASLEVALYKKPMVIAYKM 301
           Q A F++ I + G  DL I V+ GQSH+AMEAADAVLVASGTASLEVALYKKPMVI+YK+
Sbjct: 241 QIAAFQEQIRQGGYEDLDISVIRGQSHSAMEAADAVLVASGTASLEVALYKKPMVISYKV 300

Query: 302 MRASYAIMRHMNYQPWVGLPNILAREFVVPELLQDAATPQALADALWKQLDDPVHCRNLR 361
             ASY IMRHM YQPWVGLPNILAREF+VPELLQ  ATP+ALADA+W QL+D  H + L 
Sbjct: 301 NWASYQIMRHMAYQPWVGLPNILAREFLVPELLQHQATPEALADAMWFQLEDHAHQQRLA 360

Query: 362 QRFTDMHHTLLRDTANASAQAVCALLDRQR 391
           +RF DMH +LLRDT+  SA AVC ++  +R
Sbjct: 361 RRFADMHQSLLRDTSRESANAVCEVIGARR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,160,582
Number of extensions: 46259
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)