BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0033.p
         (350 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311503|ref|YP_003775595.1| UDP-3-O-3-hydroxymyristoyl gluc...   533   e-153
gi|300313491|ref|YP_003777583.1| UDP-3-O-[3-hydroxymyristoyl] gl...    89   5e-19

>gi|300311503|ref|YP_003775595.1| UDP-3-O-3-hydroxymyristoyl
           glucosamine N-acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 362

 Score =  533 bits (1374), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/344 (81%), Positives = 309/344 (89%)

Query: 1   LVERLGGQLKGNAQIEVGGIAPLDAATSSHMTFLSNPRFRSQAEQTQAAALILSEADDEA 60
           LVERLGG+LKG+AQI V GIAPLDAA SSH+TFLSNP+FR+QA+QTQAAALILSEADD  
Sbjct: 8   LVERLGGELKGDAQIAVQGIAPLDAAGSSHITFLSNPKFRAQADQTQAAALILSEADDAQ 67

Query: 61  VAAYQGARIVTKNPYAYFAKAAQLFAAQAAIPVAAGIHASACVDPSAQVAASATIGPQVV 120
           V AY GARIVT+NPYAYFA+AAQLF A A I   AGIHASA VDPSA VAA A IGP VV
Sbjct: 68  VQAYAGARIVTRNPYAYFARAAQLFQAMAEIVPPAGIHASAVVDPSASVAADAVIGPLVV 127

Query: 121 IEAGAVIGERAVIDAGSYIGRNAHIGADTHFYARVTFHSGCEIGERGIVHSGVVIGADGF 180
           IEAGAVIG RA IDAGS+IGR+A +G DTHF+ARVT H  CEIG RGIVHSG VIGADGF
Sbjct: 128 IEAGAVIGARARIDAGSFIGRHAKVGEDTHFHARVTLHHACEIGARGIVHSGAVIGADGF 187

Query: 181 GFANESGIWVKIPQVGRVVIGNDVEIGANTTIDRGALSDTVLEDGVKLDNQIQIAHNCHI 240
           GFANE+G W+KIPQVGRV+IG+DVEIGANTTIDRGAL+DTV+E+GVKLDNQIQIAHNCHI
Sbjct: 188 GFANEAGQWIKIPQVGRVMIGDDVEIGANTTIDRGALADTVIEEGVKLDNQIQIAHNCHI 247

Query: 241 GAHTAIAACAGIAGSAKIGKYCSIGGAAMIHGHITIADRVHVSAGTLALRSIQEPGQYTG 300
           GAHTAIAACAGIAGSAKIGKYCSIGGAAMIHGHITI D+VHVSAGTLALRSI EPGQYTG
Sbjct: 248 GAHTAIAACAGIAGSAKIGKYCSIGGAAMIHGHITIVDKVHVSAGTLALRSILEPGQYTG 307

Query: 301 FYPIAKHGEWEKSAALVRNLGTMREKIRALEKTIKSLTEQLTAQ 344
           FYPI +H +WEKSAALVRNLGTMREKIRALEK++K+LT++   Q
Sbjct: 308 FYPITEHRDWEKSAALVRNLGTMREKIRALEKSLKTLTQEQAGQ 351


>gi|300313491|ref|YP_003777583.1| UDP-3-O-[3-hydroxymyristoyl]
           glucosamine N-acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 115/259 (44%), Gaps = 39/259 (15%)

Query: 69  IVTKNPY-AYFAKAAQLFAAQAAIPVAAGIHASACVDPSAQVAASATIGPQVVIEAGAVI 127
           I+T +P  AY     QL A     P   GI +SA +  S  +A   +IG  V+IE    I
Sbjct: 72  IITPHPRQAYAHIVEQLLA-----PTVPGIASSALIGNSVTIAPGVSIGEGVIIEDDVQI 126

Query: 128 GERAVIDAGSYIGRNAHIGADTHFYARVTFHSGCEIGERGIVHSGVVIGADGFG-FANES 186
           GE   I+ G+ IGR + IGA +   AR                   VIG +G G F    
Sbjct: 127 GENTRIETGALIGRGSRIGARSRIGART------------------VIGNEGLGSFETAD 168

Query: 187 GIWVKIPQVGRVVIGNDVEIGANTTIDRGALSDTVLEDGVKLDNQIQIAHNCHIGAHTAI 246
           G    +  +G V IG+DVEIGA   + RG + DTV+ +   +  Q+ I HN  IG    I
Sbjct: 169 GQLRNVRHLGNVRIGDDVEIGALCAVGRGTIDDTVIGNNTHIGPQVNIGHNSVIGMRCQI 228

Query: 247 AACAGIAGSAKIGKYCSIGGAAMIHGHITIADRVHVSAG-TLALRSIQE----PGQYTGF 301
           A  + ++GS  I         A +  + T+ D V + AG T+ + ++      PGQ    
Sbjct: 229 AGRSHLSGSVVIEDE------AKLWANCTLKDGVRIGAGATVGMGALVNHDVLPGQTVAT 282

Query: 302 YPIAKHGEWEKSAALVRNL 320
            P  +    +K A  V N 
Sbjct: 283 LPAIR---LQKLAQFVHNF 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 920,118
Number of extensions: 34719
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,212,660
Effective search space: 320142240
Effective search space used: 320142240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)