BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0031.p
         (790 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8...  1426   0.0  

>gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87
           antigen protein [Herbaspirillum seropedicae SmR1]
          Length = 791

 Score = 1426 bits (3691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/791 (84%), Positives = 740/791 (93%), Gaps = 1/791 (0%)

Query: 1   MKLHSAHFPAPIFSRSLIAAAALTLCTGQAFAVEPFVVKDIRVEGIQRTEAGTVFSYLPV 60
           MKLH A  P P FSR LIAAAA  LC+ QA AV PFVVKDIRVEGIQRTEAGTVFSYLPV
Sbjct: 1   MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV 60

Query: 61  RVGDTFTDEKGTAAIKALYATGFFKDVRVEAEGDVLVVQVEERPAIASVDFTGIKEFDKE 120
           RVGDTFTDEKGTAAIKALYATGFF+DVR+E+EGDVLVVQV ERPAIASVDF+GIKEFDKE
Sbjct: 61  RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE 120

Query: 121 QLTKALKEIGVAESRIFDKSQVDRAEQELKRQYLSRGLYGAKVTTTITPVERNRVAVTFA 180
           QLTKALKEIGVAESRIFD+SQVDRAEQELKRQYLSRGLYGAKV+TT+TPVERNRVA+TF+
Sbjct: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS 180

Query: 181 VDEGDTSRIKQINIIGNKAFSDGTLRDQLKLTTPGWFTWYTKADQYSKQKLAGDIESLRS 240
           VDEGD SRIKQIN +GNK FSD TLRDQ+KLTTPGWFTWYTKADQYSK+KL GDIE+LRS
Sbjct: 181 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240

Query: 241 YYLDRGYLEMQIDSTQVSITPDKKDIYVTININEGEKYTVSDIKLDGEMFGMEADLAALV 300
           YYLDRGYLEMQ++STQVSITPDKKDIY+T+NI EGEKYTVS +KL+GEMFGME +LA LV
Sbjct: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300

Query: 301 QLKKGEIYSGSKLTDSTKKISERLGNFGYAFANVNANPNVDREKKEVAFTIMVDPGKRVY 360
           QLK G++YSG+KLTDSTKKI ERLGNFGYAFANVNANPNVDREKKEVAFTIM+DPGKRVY
Sbjct: 301 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY 360

Query: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTVETPEVPNS 420
           VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVT++TPEVP +
Sbjct: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT 420

Query: 421 NDQIDVNLKVEEKPTGNIMIGAGFSQTDKLSLTGSISQENAFGSGNTIGVEVNTSSRYRT 480
           +DQ+DVN+KVEEKPTGNIM+GAGFSQ+DKLSLTGSISQENAFGSGNT+G+++NTSSRYRT
Sbjct: 421 SDQVDVNMKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRT 480

Query: 481 IAVSQTNPYFTDDGVSRTYEVFLRTIRPSAYTTGDYRVKTIGGSVKFGVPFSELDRIFFG 540
           ++VS TNPYFTDDG+SRTYEV+LRT+RPS Y TGDYRVKT+GGS+KFGVPFSELDR+FFG
Sbjct: 481 VSVSTTNPYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFG 540

Query: 541 IGIENTKVDTDSTSPSLYRQYVRDFGAGGVAGCDVVNNAS-CGVGTASTTSFPLTAAWQR 599
           +G+ENT V TD+TSP+LYRQYVRDFG  GVAGCDV ++ + CG+G+A TTS PLT AWQR
Sbjct: 541 VGLENTDVSTDTTSPTLYRQYVRDFGGAGVAGCDVTSSGNGCGIGSARTTSIPLTVAWQR 600

Query: 600 DSRDSALVPTKGRYQRANLELSAVGTLKYYRATYQHQYFQPFWANAATIAFNGEVDYGKG 659
           D RDSALVPT GRYQRANLE+S +GTLKYYRA+YQHQYFQPF++ A T+A NGEVDYG+G
Sbjct: 601 DGRDSALVPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYGRG 660

Query: 660 IGGKPYPIFKNYYAGGIGTVRGYEASSLGNLKDQYGDSMGGASRLLGSVELQFPFPGSGQ 719
           IG KPYP+FKNYYAGGIGTVRGYEASSLG+LKDQYGDSMGGASRL G+VELQFPFPGSGQ
Sbjct: 661 IGSKPYPVFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQ 720

Query: 720 DRSLRWFTFLDGGNVFADGERIKINDLRYSTGLGISWISPIGPLKLSYGKPLNLKQGDKS 779
           DR+LRWFTF DGGNVFADG+ IK NDLRYS G+GISW+SPIGPLKLS+GKPLNLK GDKS
Sbjct: 721 DRTLRWFTFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGDKS 780

Query: 780 QNFQFQLGTGF 790
           Q FQFQLGTGF
Sbjct: 781 QTFQFQLGTGF 791


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,464,229
Number of extensions: 106313
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 697
Effective length of database: 1,179,515
Effective search space: 822121955
Effective search space used: 822121955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)