BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0028.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependen...   447   e-127

>gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependent
           proteases 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  447 bits (1149), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/298 (74%), Positives = 255/298 (85%), Gaps = 3/298 (1%)

Query: 5   NGEPVHAWTEVRWQLMQHVLEKTPARLDVESAAPNG-GKLLNTVKLSLDGVSTEDLEGDF 63
           NG PVH W+EVRW+LMQ VLEK  ARLDVE   PNG GKLLNTV L L  ++ +DLEGDF
Sbjct: 158 NGAPVHVWSEVRWKLMQLVLEKADARLDVERPNPNGSGKLLNTVSLPLGSIAADDLEGDF 217

Query: 64  LAKLGISLARPQAILGKIMEGPAMQAGLQKGDLILAVNGAPIKDGLALVELVRASPGKPL 123
           LAKLG+SLARP A+LGKIM+GPA  AGLQ GD I A++GAP++DGLA VE VR S GKPL
Sbjct: 218 LAKLGLSLARPPAVLGKIMDGPAKTAGLQTGDRITAIDGAPVQDGLAFVETVRESGGKPL 277

Query: 124 TLHGLRGQSEFDIAVTPDTLTD--NGQTIGRIKVEVPLAPEMTVVSDPPWTAIAKGAEKT 181
           TL  +RG + F + VTP+++ +  +G+ IGRIKVEVPLAPEM  VSD  +TA+AKG  +T
Sbjct: 278 TLEAVRGNAPFTVRVTPESVDEEGSGKRIGRIKVEVPLAPEMATVSDDIFTALAKGVRRT 337

Query: 182 WDTSAMTLKMIGKMIVGQVSWKNITGPITIADYAGQTAKVGLVSYLSFIAFISISLGVMN 241
           WDTS M++KMIGKM++GQVS KNITGPITIADYAGQTA+VGLVSYLSF+AFISISLGVMN
Sbjct: 338 WDTSVMSIKMIGKMVIGQVSLKNITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMN 397

Query: 242 LLPIPVLDGGHLLYYSLEILTGRPVSERFGEIAQRAGMGILMMLMLVAAFNDIVRLMF 299
           LLPIPVLDGGHLLYY+LEILTGRPVSERFGEIAQRAG+GILM LMLVAAFNDIVRLMF
Sbjct: 398 LLPIPVLDGGHLLYYALEILTGRPVSERFGEIAQRAGLGILMALMLVAAFNDIVRLMF 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,009,533
Number of extensions: 44214
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)