BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0024.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...   365   e-102
gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferas...    62   4e-11

>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/272 (70%), Positives = 230/272 (84%), Gaps = 1/272 (0%)

Query: 1   MLKTRVITALVLLAILLPVLFLNNFFAFATVTVAFFAAGVWESLRLFRYSRAELWAGFWT 60
           MLKTRVITAL+LLAILLP+L+   F AFA   + FFAAG WE  RLF+  R  LWA  WT
Sbjct: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT 60

Query: 61  VGYAVVVFVSGLPSVRSLFAVCVLLWVIRFVPALKLGLPQLKTPANRLLSITYTLALLGC 120
           + + V++F +G+PSVR L+ +CVLLW +RFVPAL LGLP +++ ANRLL+ TY L++LGC
Sbjct: 61  LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC 120

Query: 121 FIAIVSLFQHSPLYLLSVMAIVWVADIGAYFAGKGFGRHKLAPSISPGKSWEGAIGGWLA 180
           F+AIV LFQ +PLYLLSVMA+VWVADIGAYF+GKGFGRHKLAP+ISPGKSWEGA+GGWLA
Sbjct: 121 FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA 180

Query: 181 VLVAAAATVMYLD-GDTFSGRLYERFGWVGFLVVMSLLVAASVVGDLFESQLKRRAGFKD 239
           VLV +AA  M +  G+TF   LY R+GW+GF+ V++++VAASVVGDLFESQLKRRAG KD
Sbjct: 181 VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD 240

Query: 240 SSNLLPGHGGVLDRIDALIPVLPLAALIDLWL 271
           SSNLLPGHGGVLDRIDALIPVLPLAAL+DLWL
Sbjct: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWL 272


>gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 11/113 (9%)

Query: 145 ADIGAYFAGKGFGRHKLAPSISPGKSWEGAIGGWLAVLVAAAATVMYLDGDTFSGRLYER 204
           +D+  Y  GK FG+ KLAP ISP K+ EG +GG L      AA       +         
Sbjct: 195 SDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGGVLTSTAVGAALYWITPFNV-------- 246

Query: 205 FGWVGFLVVMSLLVAASVVGDLFESQLKRRAGFKDSSNLLPGHGGVLDRIDAL 257
             W   LV +++ +     G    S +KR  G KD   ++ GHGG+LDR+D++
Sbjct: 247 --WQAALVALTINILG-FFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSI 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 702,388
Number of extensions: 26926
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)