BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0013.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313939|ref|YP_003778031.1| alpha-ketoglutarate-dependent t...   127   1e-30

>gi|300313939|ref|YP_003778031.1| alpha-ketoglutarate-dependent
           taurine dioxygenase oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 142/299 (47%), Gaps = 46/299 (15%)

Query: 6   LNLHPVAGRIGAEIRDVRLSGDLGQETFHAIRQALLKYKVLFFR-----GQQHLDDVGQE 60
             +H     +GAEI  + L+  +       IR+AL+++ V+ FR      QQH+D     
Sbjct: 44  FEIHRFDAPLGAEIVGLDLNKPVSASELARIRKALVEHGVVVFRDQRITPQQHVD----- 98

Query: 61  AFAKLFG----------ELVAHPTVPVRDGTGYLLELDSVHGGR-------ANSWHTDVT 103
            F++ FG           L  HP +        L+  + V  G+          WH+D++
Sbjct: 99  -FSRRFGPLQVHVLNRFHLAGHPEI--------LIVSNVVENGKPIGLVDAGADWHSDLS 149

Query: 104 FDLAYPQASILRAVVIPQAGGDTVWANTAQAYLDLPPALRQLADTLWALHTNDYDYAARF 163
           +       ++L +  +P   GDT++ANTA A+  LP AL+ L +   A+H+  Y Y  R 
Sbjct: 150 YMPKPSLGALLHSQELPAERGDTLYANTAAAWDSLPAALKTLLEGKRAVHSYVYRYE-RL 208

Query: 164 NTDDAGLKRYREVFTSR----IYETEHPVVRVHPETGERTLVLGH-FVKKLLGYPTGDSE 218
                 L  +R   T +    +   EHPVV  HPE+G + L +   F   ++G P  +S+
Sbjct: 209 RK----LSPWRAPLTQQQIDEVPPVEHPVVITHPESGRKILFVSEGFTSHIIGIPRDESD 264

Query: 219 HLLKLLESYVIRLENTVRWRWTAGDIAIWDNRATQHYAINDYGSQHRVVRRVTIAGDVP 277
            LLK L +++ R EN    RW A D+  WDNR+TQHYA        R + R T+ GDVP
Sbjct: 265 ALLKELHTHITRPENVYTHRWQAHDLVFWDNRSTQHYAAITPQHLRRTLYRTTVEGDVP 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,098,932
Number of extensions: 48618
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)