BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0010.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A...    65   1e-12
gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A...    62   1e-11
gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A...    61   2e-11
gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporte...    57   4e-10
gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her...    56   6e-10

>gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score = 65.1 bits (157), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
           LTR  LQ EL RIW     T++ VTH +EEAIYL D++VVM  RPG ++R + V L   R
Sbjct: 174 LTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLR 233

Query: 61  ERAAVGFAEVKQQV 74
           + A   F  +K+++
Sbjct: 234 DPADPEFNALKREL 247


>gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 2   TRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
           TR  +Q EL R+W A   +++ VTHD+EEAI L DKV V+  RP  ++ + P+ L  PR
Sbjct: 188 TRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPR 246


>gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 2   TRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRP-GRIRRIVPVGLAHPR 60
           TR  LQ EL RIW++ G T++ VTHD+ EAI L D+VV M   P   I+ I  V L HPR
Sbjct: 168 TREVLQSELDRIWKSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPR 227

Query: 61  ERA 63
           + A
Sbjct: 228 DPA 230


>gi|300310980|ref|YP_003775072.1| alkanesulfonates ABC transporter
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 56.6 bits (135), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 60
           LTR  +Q  +  +W+  G T +LVTHDV+EAI L D+V+++E   GR+     + LA PR
Sbjct: 181 LTRIEMQTLIESLWRERGFTALLVTHDVQEAIALADRVLLIE--DGRVALDQRIDLARPR 238

Query: 61  ERAAVGFAEVKQQVL 75
            R    FA +++ +L
Sbjct: 239 SRGQAQFAALEEAIL 253


>gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 55.8 bits (133), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 1   LTRAYLQQELHRIWQAEGITMILVTHDVEEAIYLGDKVVVMEPRP-GRIRRIVPVGLAHP 59
           LTRA+LQ EL +I      T+++VTHDV+EA+ L D++V+M   P   I  ++ V LA P
Sbjct: 178 LTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARP 237

Query: 60  RER 62
           R+R
Sbjct: 238 RDR 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 299,672
Number of extensions: 8472
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 11
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)