BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0009.p (156 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 115 2e-27 gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate A... 114 4e-27 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 110 5e-26 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 108 2e-25 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 106 9e-25 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 21 GDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQVLLDGERIVGTSLR 80 GDL V+++ T I GE V++VG SGCGKSTLL + GLE+ G V DG+ I G Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 81 RGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVGLEGFEKSYPHQLSG 140 R ++FQE+ L+PWLT++ N+ L L + + R + V L+GFE YPHQ+SG Sbjct: 73 RTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSG 132 Query: 141 GMAQRVXTNRSARSTP 156 GM QR R+ S P Sbjct: 133 GMRQRAALARAFISQP 148 >gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 447 Score = 114 bits (285), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 12 LSKSYPVKDG-DLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQVLLD 70 +SKSY G +L VLD++ L + GE ++++G SG GKST+LR + GL E G + Sbjct: 18 VSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAA 77 Query: 71 GERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVGLEGF 130 G+ + G + +VFQ L+PWLTVE N+ +GL++ + T ++ AV I L+GL + Sbjct: 78 GKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGLGNY 137 Query: 131 EKSYPHQLSGGMAQRVXTNRSARSTP 156 +YP +LSGGM QRV R+ S P Sbjct: 138 HSAYPRELSGGMRQRVGIARALVSKP 163 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 62/153 (40%), Positives = 82/153 (53%), Gaps = 3/153 (1%) Query: 7 LDIQHLSKSYPVKDGDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQ 66 +DI + + K G L ++ LT+ GEFV+++G SGCGKSTLL LI GL + G Sbjct: 11 IDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGV 70 Query: 67 VLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLG---LLNADLTPGQKRLAVREHIA 123 +L I G + R +VFQ H L PWL+ NI LG + A Q R R +A Sbjct: 71 LLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALA 130 Query: 124 LVGLEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156 LVGL E P+++SGGM QRV R+ P Sbjct: 131 LVGLSAAENKRPNEISGGMKQRVGIARALAMEP 163 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 108 bits (270), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 7 LDIQHLSKSYPVKDGD-LAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRG 65 L +++ S + +D + LD V+L I G FV +G+SGCGKSTLL + G G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 66 QVLLDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALV 125 ++ LDG+ + G RG+VFQ+ L PW +V++N+ LGL A ++ R +E + LV Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 126 GLEGFEKSYPHQLSGGMAQRVXTNRSARSTP 156 GL+ F ++ P++LSGGM QRV R+ P Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNP 152 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 106 bits (264), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 77/142 (54%) Query: 9 IQHLSKSYPVKDGDLAVLDDVTLTITPGEFVSIVGSSGCGKSTLLRLIVGLEEDYRGQVL 68 IQ + K + D ++ L D+ L I G+FV ++G SGCGKSTLL I G GQ+L Sbjct: 12 IQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQIL 71 Query: 69 LDGERIVGTSLRRGIVFQEHRLFPWLTVENNIQLGLLNADLTPGQKRLAVREHIALVGLE 128 D + + RG+VFQE+ LFPW+TVE N+ GL + V + + +GL Sbjct: 72 TDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLI 131 Query: 129 GFEKSYPHQLSGGMAQRVXTNR 150 F +P LSGGM QRV R Sbjct: 132 DFRTRFPKDLSGGMRQRVAIAR 153 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 498,209 Number of extensions: 20386 Number of successful extensions: 339 Number of sequences better than 1.0e-08: 93 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 94 Length of query: 156 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 78 Effective length of database: 1,250,540 Effective search space: 97542120 Effective search space used: 97542120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)