BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0003.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 172 2e-44 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 162 2e-41 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 152 3e-38 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 147 8e-37 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 145 3e-36 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/205 (46%), Positives = 124/205 (60%), Gaps = 13/205 (6%) Query: 12 KSFGDETILQGVELALAEREVVALLGPSGCGKSTLLRIAAGLDKDFLGSVTRATELTGQR 71 K FGD +++ +A E+VAL+GPSGCGKSTLL +AAGL+K GSV + Sbjct: 10 KHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGP 69 Query: 72 NGGVAFVFQEPRLMPWLTVAQNVGFA------DGDRAD---RAWISQLLEEVGLAGWEDS 122 + +FQE L PWLT+ QNV A D +A R W LE V L G+E Sbjct: 70 HPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVW----LENVKLKGFEHY 125 Query: 123 LPKQLSGGMAQRVAIARGLYSRPRVLLLDEPFSAVDAFTRMKLQDLLLGLAQQHQISLLL 182 P Q+SGGM QR A+AR S+P+ LLLDEPF A+DA TRM LQD L L +Q +++L Sbjct: 126 YPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVL 185 Query: 183 VTHDIDESLYLGDRVLVMGSRPGNI 207 VTHD+DE+L+L DR+ V RP + Sbjct: 186 VTHDVDEALFLADRIFVFSPRPAKV 210 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 5/216 (2%) Query: 20 LQGVELALAEREVVALLGPSGCGKSTLLRIAAGLDKDFLGSVTRATELTGQRNGGVAFVF 79 L+ + L + + + V LLGPSGCGKSTLL AG G + ++ + VF Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 80 QEPRLMPWLTVAQNVGFA----DGDRAD-RAWISQLLEEVGLAGWEDSLPKQLSGGMAQR 134 QE L PW+TV QNV F +A+ ++QLL+++GL + PK LSGGM QR Sbjct: 89 QEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQR 148 Query: 135 VAIARGLYSRPRVLLLDEPFSAVDAFTRMKLQDLLLGLAQQHQISLLLVTHDIDESLYLG 194 VAIAR L ++L+DEPF A+DA TR LQD LL + + + +++ VTH I+E++YL Sbjct: 149 VAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLA 208 Query: 195 DRVLVMGSRPGNIRNTILVGLPQPRQRADQRLAVFK 230 DR++VM RPG ++ +LV LP+ R AD K Sbjct: 209 DRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALK 244 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 132/236 (55%), Gaps = 12/236 (5%) Query: 8 RVRRKSFGDETILQGVELALAEREVVALLGPSGCGKSTLLRIAAGLDKDFLGSV-----T 62 RV + L V L + E V+LLGPSGCGKSTLL++ AGL++ G + Sbjct: 24 RVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGN 83 Query: 63 RATELTGQRNGGVAFVFQEPRLMPWLTVAQNVGFA-DGDRADRAW----ISQLLEEVGLA 117 AT T +R +A VFQE LMPW TV QNV D RA ++ L+ VGL Sbjct: 84 LATVGTPERT--LAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVGLE 141 Query: 118 GWEDSLPKQLSGGMAQRVAIARGLYSRPRVLLLDEPFSAVDAFTRMKLQDLLLGLAQQHQ 177 + LP++LSGGM R +IAR L + P +LL+DEPF A+D FTR KL L + + Sbjct: 142 SFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQD 201 Query: 178 ISLLLVTHDIDESLYLGDRVLVMGSRPGNIRNTILVGLPQPRQRADQRLAVFKAHA 233 ++++ VTH I E+++L RV+VM +RPG + + + P PR A + A F + Sbjct: 202 LTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPRDEAFRMSAPFMQYC 257 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 147 bits (371), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 9/229 (3%) Query: 20 LQGVELALAEREVVALLGPSGCGKSTLLRIAAGLDKDFLGSVTRATELTGQRNGGVAFVF 79 L+ +++A E VA++GP+GCGKST L + GL K LG V + + + FVF Sbjct: 42 LRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVF 101 Query: 80 QEPRLMPWLTVAQNVG----FADGDRAD-RAWISQLLEEVGLAGWEDSLPKQLSGGMAQR 134 Q + PW +V +NV F +A A + + VGL + D P QLSGGM +R Sbjct: 102 QNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKR 161 Query: 135 VAIARGLYSRPRVLLLDEPFSAVDAFTRMKLQDLLLGLAQQHQISLLLVTHDIDESLYLG 194 VA+A+ + P +LL+DEPFSA+D TR +QD LL L H S++ VTHD++E++ L Sbjct: 162 VALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALA 221 Query: 195 DRVLVMGSRPGNIRNTILVGLPQPR----QRADQRLAVFKAHALSELHE 239 D+V V+ +RP +++ + LP+PR R +QR ++L E Sbjct: 222 DKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDISRRIWADLRE 270 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/211 (40%), Positives = 120/211 (56%), Gaps = 9/211 (4%) Query: 20 LQGVELALAEREVVALLGPSGCGKSTLLRIAAGLDKDFLGSVTRATELTGQRNGGVAFVF 79 L+ + L +A+ E V L+G SGCGKSTLL + AGL K G + A G A VF Sbjct: 30 LREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAVVF 89 Query: 80 QEPRLMPWLTVAQNV--------GFADGDRADRAWISQLLEEVGLAGWEDSLPKQLSGGM 131 Q L+PWL+ +N+ G + R L VGL+ E+ P ++SGGM Sbjct: 90 QNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGGM 149 Query: 132 AQRVAIARGLYSRPRVLLLDEPFSAVDAFTRMKLQDLLLGLAQQHQISLLLVTHDIDESL 191 QRV IAR L P+VLL+DEPF A+DA TR LQD LL + + ++++VTHD+DE++ Sbjct: 150 KQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAV 209 Query: 192 YLGDRVLVMGSRP-GNIRNTILVGLPQPRQR 221 L DR+++M + P I + V L +PR R Sbjct: 210 LLSDRIVMMTNGPAATIGEVLEVKLARPRDR 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,908 Number of extensions: 29722 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 133 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)