BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0257.0024.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine...    78   1e-15
gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine...    77   2e-15
gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine...    69   7e-13

>gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine
           protease [Herbaspirillum seropedicae SmR1]
          Length = 492

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 19/181 (10%)

Query: 54  GSAVVI-GPGRLVTNCHVLARAXP-------KLEFP------DVERDLCQVRVEGMTAPA 99
           GS  +I   G ++TN HV+  A         K EF       D   D+  ++++G   P 
Sbjct: 117 GSGFIISADGFIMTNAHVVEGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSNLPR 176

Query: 100 VSIAPSRNLRVGQKVFTLGAPSALEETISDGLLSALRLDPDGKLRFLQISAPISSGSSGG 159
           +++  S  +RVG+ V  +G+P  LE T++ G++SA   D    L  +Q    ++ G+SGG
Sbjct: 177 LNMGDSDKIRVGEWVLAIGSPFGLENTVTAGIVSAKARDTGDYLPLIQTDVAVNPGNSGG 236

Query: 160 GLFNDKGELIGITTAMLAGT-TLQNLSFAVPADWIW----ELEARGRAAKPSAPIAVASN 214
            L N KGE+IGI + + + +     +SFAVP D       +L+A GR  +    + +   
Sbjct: 237 PLINLKGEVIGINSQIYSRSGGFMGISFAVPIDEALRVADQLKASGRVTRGRIGVQIGEV 296

Query: 215 T 215
           T
Sbjct: 297 T 297


>gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine
           endoprotease [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 17/163 (10%)

Query: 54  GSAVVIGP-GRLVTNCHVL-------ARAXPKLEFP------DVERDLCQVRVEGMTAPA 99
           GS  +I P G ++TN HV+        +   + EF       D + D+  +R++    P 
Sbjct: 126 GSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKNLPT 185

Query: 100 VSIAPSRNLRVGQKVFTLGAPSALEETISDGLLSA--LRLDPDGKLRFLQISAPISSGSS 157
           V I     ++VGQ V  +G+P   + T + G++SA    L  D  + F+Q    ++ G+S
Sbjct: 186 VQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAVNPGNS 245

Query: 158 GGGLFNDKGELIGITTAMLAGT-TLQNLSFAVPADWIWELEAR 199
           GG LF+  G++IGI + + + T   Q LSF++P D   ++E +
Sbjct: 246 GGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQ 288


>gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine
           protease [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 18/156 (11%)

Query: 52  SAGSAVVIGP-GRLVTNCHVLA-------------RAXPKLEFPDVERDLCQVRVEGMTA 97
           S GS V++ P G ++TN HV+              +A  K+   D E DL  ++++    
Sbjct: 112 SLGSGVIVSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNL 171

Query: 98  PAVSIAPSRNLRVGQKVFTLGAPSALEETISDGLLSAL---RLDPDGKLRFLQISAPISS 154
           PA+++    N  VG  V  +G P  + +T++ G++SAL    L  +    F+Q  A I+ 
Sbjct: 172 PAITLGHPENSSVGDVVLAIGNPFGVGQTVTMGIVSALGRNHLGINTFENFIQTDAAINP 231

Query: 155 GSSGGGLFNDKGELIGITTAMLAGTTLQ-NLSFAVP 189
           G+SGG L +  G L+GI TA+ + T     + FA+P
Sbjct: 232 GNSGGALVDTNGNLLGINTAIYSRTGGNLGIGFAIP 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 964,068
Number of extensions: 35557
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 131 (55.1 bits)