BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0021.p (703 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 338 1e-93 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 327 2e-90 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 322 5e-89 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 249 4e-67 gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece... 239 5e-64 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 338 bits (866), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 217/566 (38%), Positives = 309/566 (54%), Gaps = 28/566 (4%) Query: 125 LPLVTVHGAAETATSHVNGYAAKRTATATKTDTPIEEIPQSISVVTSDQITTTGARTLQD 184 LP V + AETA VNGY AKRTA+ATKTDTP+ E+PQS+SVVT D++ G +L D Sbjct: 31 LPQVEIKADAETANGPVNGYVAKRTASATKTDTPVLEVPQSVSVVTRDEMDARGVTSLLD 90 Query: 185 ALGYTAGVSAEQGSYGVMTSESFFIRGFEVQPYSGGILRDGMKYQPNVYNGAQ-EVYGLE 243 L Y G ++E E F +RGF + L +G++ P + + E YG+E Sbjct: 91 VLRYMPGANSETHGVDPRGYEYFNLRGFINAQVTSNFL-NGLRQIPGGFGQFRTETYGME 149 Query: 244 HVEVLKGASSILYGTAAPGGLINAITKRPTAESLREINVEYGNHNRKQISGDISGPLDDA 303 +EVL+G S+ +G A PGG+IN ++K P + E+ V+ G+ NRKQ+ D++G D Sbjct: 150 RIEVLRGPGSVTFGQADPGGVINRVSKLPGMDIPNELGVDIGSFNRKQVVADLNGHTQD- 208 Query: 304 GELTYRLTALERKADSFADF-----GKNDRTYLAAALTWSPSAATSLTLLSSYQHSKT-T 357 GE +R+ L +++ F G N+R YLA +LTW PSA+TSLTL++ Y + ++ + Sbjct: 209 GEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFYLAPSLTWRPSASTSLTLMADYMNDRSGS 268 Query: 358 DNGPLPRQGTLLFNPNGQLPGDRYLGEPSFNLFDNTQKTVSSIFEHAFSDTLKFRQSLRY 417 R G +L + +G+P+F+ N Q + FEH F + FRQ+ R Sbjct: 269 SRWTAVRPGNVLTHT--------LIGDPNFDRQSNDQWSFGYQFEHKFDNAWTFRQNFR- 319 Query: 418 FTSSLDYKYYQITGVGTDLRTVSRRGRAFLDS-TEAVTADTNLEYSFDTGPVAHKVLLGV 476 ++L Y GT +V RG +S + D LE G H VL G+ Sbjct: 320 -QANLK-SVYAALNPGTLTGSVLTRGTTVYNSQVDNTLVDNQLEGRLKWGATEHTVLFGL 377 Query: 477 DY--LTQRHTSDRANTTFTDIDMYNPVYGQPFGSATDT-DKWRLKQSGTGLYLQDQLKIA 533 D+ + R R +ID NPVYG +AT + TGLY QDQ+K Sbjct: 378 DWSRMYDREVRYRGAAPSLNID--NPVYGVTIPAATTLFGNLEENMNQTGLYAQDQIKFD 435 Query: 534 DKWVLLVGGRQDWTRLEDRDLLNNPDGIVQTDKAFSGRAGLVYLANNGLSPYVSFSQSFA 593 + L +GGR D + E R+ N D A SGR GL YL ++PYVS++ SF Sbjct: 436 QRLTLTLGGRWDKVKDETRNYFNRTT-TRSDDSALSGRIGLSYLVTRDIAPYVSYATSFL 494 Query: 594 PEEGFDRLRNAFKPTRGEQYEVGLRYQTPDKKLLLSAAIYQLTQSNVQTPDPVDPDNFSV 653 P+ G D F PT+ Q EVG++YQ D K L +AA+++LT++NVQTPDP NF+V Sbjct: 495 PQTGSDFNGKPFDPTKARQAEVGIKYQPADGKTLFTAALFELTKTNVQTPDPAHT-NFNV 553 Query: 654 QTGEVRSRGVELEAKGALTKNLNIXA 679 +GE++SRG+ELEAKG + K LN+ A Sbjct: 554 LSGEIKSRGLELEAKGEIVKGLNLSA 579 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 327 bits (838), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 234/668 (35%), Positives = 338/668 (50%), Gaps = 40/668 (5%) Query: 35 PAYAQQQ---EITRSYRVAPGPLTSVLKQFGSDAGIMLSFSNELTQGLQSPGINGTRTAA 91 P Q Q E R + VA GPL L +F AGI +S+++ L QG Q + G + + Sbjct: 56 PVVTQAQGAPEARRHFNVAAGPLEDALNRFARQAGITMSYASALVQGRQVTALQGEYSVS 115 Query: 92 EGLAQGLAGSGLVAVRQEDGSFIVQNXSRADAPLPLVTVHGAAETATSH----------V 141 +GL LAGSGL AVR ++G++ +Q + AP + T+H S V Sbjct: 116 QGLEVLLAGSGLRAVRSDNGAYALQPLVQG-APEQVDTLHRLGNITVSGRRDEPGAADPV 174 Query: 142 NGYAAKRTATATKTDTPIEEIPQSISVVTSDQITTTGARTLQDALGYTAGVSAEQGSYGV 201 GY A R+ATATKTDTP+ E+ QS+SVVT ++ GA ++ D L Y G + E Sbjct: 175 EGYVALRSATATKTDTPLLELAQSVSVVTRAEMEARGANSILDVLRYMPGANTETHGVDP 234 Query: 202 MTSESFFIRGFEVQPYSGGILRDGMKYQPNVYNGAQ-EVYGLEHVEVLKGASSILYGTAA 260 + F +RGF + L +G++ P+ + + E YGLE VEVL+GA+S +G A Sbjct: 235 RGYDYFNLRGFINAQTTSNYL-NGLRQIPSGFGMFRTETYGLERVEVLRGANSASFGQAD 293 Query: 261 PGGLINAITKRPTAESLREINVEYGNHNRKQISGDISGPLDDAGELTYRLTALERKADSF 320 PGG++N ++K + + E+ V+ G+ R+Q++ D+SG LD G + RL L D+ Sbjct: 294 PGGVVNRVSKLAGSGARNELMVDVGSFQRRQVAADLSGDLDPEGRVQARLVGLLLDGDTQ 353 Query: 321 ADF-----GKNDRTYLAAALTWSPSAATSLTLLSSYQHSKTTDNGPLPRQGTLLFNPNGQ 375 + G NDR YLA +L PSA TSL LL+ Y ++ + T + Q Sbjct: 354 FRYANGRAGDNDRLYLAPSLKIRPSADTSLILLAEYLKDRSGSG-----RWTAVRADGSQ 408 Query: 376 LPGDRYLGEPSFNLFDNTQKTVSSIFEHAFSDTLKFRQSLRYFTSSLDYKYYQITGVGTD 435 LG+P F+ Q ++ + EH T RQ R ++L +Y + + Sbjct: 409 T--HTLLGDPDFDQQRGEQWSLGWMLEHRLDATWTLRQHFR--QAALRSQYAAVNPGSFN 464 Query: 436 LRTVSRRGRAFLDSTEAVTADTNLEYSFDTGPVAHKVLLGVDYLTQRHTSDRANTTFTDI 495 +SR + E D G H+VLLG+D+ R + Sbjct: 465 GSILSRSTAVYDTQVENTLLDNQALARVQWGQAEHQVLLGLDWSHMSAREQRYRGVAPSL 524 Query: 496 DMYNPVYGQPFGSAT----DTDKWRLKQSGTGLYLQDQLKIADKWVLLVGGRQDWTRLED 551 D+ NPVY QP +AT D D+ ++ TGLY QDQ++ + VL +G R D +R Sbjct: 525 DIDNPVYTQPIPAATTRFGDLDQTLVQ---TGLYAQDQIRY-QRIVLTLGARYDRSRDST 580 Query: 552 RDLLNNPDGIVQTDKAFSGRAGLVYLANNGLSPYVSFSQSFAPEEGFDRLRNAFKPTRGE 611 R+ NN + + AFSGR GL YL + L+PYVS+ SF P+ G D FK Sbjct: 581 RNAANNSLQAAE-ENAFSGRVGLSYLVSPELAPYVSYGSSFLPQAGQDVDGKPFKAATAR 639 Query: 612 QYEVGLRYQTPDKKLLLSAAIYQLTQSNVQTPDPVDPDNFSVQTGEVRSRGVELEAKGAL 671 Q E G++YQ + + +AA+YQL + N DP+ NFSV G+VRSRGVELEAKG L Sbjct: 640 QIEAGVKYQPGHGRAVYTAALYQLVKDNALGSDPLHA-NFSVSNGQVRSRGVELEAKGEL 698 Query: 672 TKNLNIXA 679 LN+ A Sbjct: 699 LPGLNVTA 706 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 322 bits (826), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 233/665 (35%), Positives = 338/665 (50%), Gaps = 59/665 (8%) Query: 41 QEITRSYRVAPGPLTSVLKQFGSDAGIMLSFSNELTQGLQSPGINGTRTAAEGLAQGLAG 100 Q + + + + PGPL VL +F A + L+ + QG SPG+ G+ + G LAG Sbjct: 38 QAVQQRFDIPPGPLEQVLARFAQAADVPLALQSGKLQGQHSPGLAGSYSVQAGFDALLAG 97 Query: 101 SGLVAVRQEDGSFIVQNXSRADAP-----------LPLVTVHGAAETATSHVNGYAAKRT 149 SG + G +++ S A P LP + + +A+ + A+ + Sbjct: 98 SGYRIGKTASG-YVLVPASEAATPSAATTPAASGSLPAIQISASADPGEQR---WTARDS 153 Query: 150 ATATKTDTPIEEIPQSISVVTSDQITTTGARTLQDALGYTAGVSAEQGSYGVMTSESFF- 208 A+ TKT TP+ E+PQSISVVT+++I GA T +DALGYT GV+ YG + + Sbjct: 154 ASTTKTATPLIEVPQSISVVTAERIAAMGATTARDALGYTPGVNIS--PYGSDSRYDWIN 211 Query: 209 IRGFEVQPYSGGILRDGMKYQPNVYNGA---QEVYGLEHVEVLKGASSILYGTAAPGGLI 265 +RGF+ YS G DG+ + N + A E YG+E + VL+G +S+LYG A PGG++ Sbjct: 212 LRGFDA--YSPGFYLDGLPLR-NANSFAVWRTENYGIEQLAVLRGPASVLYGQAGPGGVV 268 Query: 266 NAITKRPTAESLREINVEYGNHNRKQISGDISGPLDDAGELTYRLTALERKADSFADFGK 325 N ++K P+A++ RE+ V+ G+ R+Q+ DI G +D G L YR+ + R A+ A K Sbjct: 269 NVVSKLPSADAPRELQVQLGSDRRRQVGADIGGAIDADGRLLYRVIGVVRDAELPAGGMK 328 Query: 326 NDRTYLAAALTWSPSAATSLTLLSSYQHSKTTDNGPL-----PRQGTLLFNPNG-QLPGD 379 NDR YLA +L W SAATSLTL Q + D G + P G+L+ G +P + Sbjct: 329 NDRLYLAPSLVWKISAATSLTL----QAALLRDQGGVYTRTRPLVGSLVPTAIGTTIPSE 384 Query: 380 RYLGEPSFNLFDNTQKTVSSIFEHAFSDTLKFRQSLRYFTSSLDYKYYQITGVGT----- 434 Y G P F+ F Q+ H F + F QS R S DY+ Q T Sbjct: 385 LYTGNPHFDHFSQDQELFGYRLAHRFDERFAFTQSARVGHMSTDYRAVQTPRFATLNAAN 444 Query: 435 -----DLRTVSRRGRAFLDSTEAVTADTNLEYSFDTGPVAHKVLLGVDYLTQRHTSDRAN 489 + + ++R +S + D L+ F TG V H VL GVDY QR D + Sbjct: 445 PNDPVNFQNLTRNLFGSRESATMFSIDNQLQADFSTGAVRHTVLAGVDY--QRSRFDAVS 502 Query: 490 TTFTDIDMYN---PVYGQ-PFGSATDTDKWRLKQSGTGLYLQDQLKIADKWVLLVGGRQD 545 + + N P Y PF R + TG+YLQDQ+K + W + +GGR D Sbjct: 503 FSGGSAPLLNIAAPSYPNGPFVVPAPYSDNRAVLTQTGIYLQDQIKWNNGWEVTLGGRHD 562 Query: 546 WTRLEDRDLLNNPDG--IVQTDKAFSGRAGLVYLANNGLSPYVSFSQSFAPEEGFDRLRN 603 + N DG TD+ F+ RA ++Y A NGL+PY+S+++SF P + L N Sbjct: 563 ---SASSTVDNRLDGSRTSSTDRKFTRRAAVLYHAANGLAPYLSYTESFNPTATVNPLTN 619 Query: 604 -AFKPTRGEQYEVGLRYQTPDKKLLLSAAIYQLTQSNVQTPDPVDPDNFSVQTGEVRSRG 662 +F P G+Q EVGLRYQ P L SAA++ L + N + D + Q GE+ RG Sbjct: 620 QSFGPETGKQTEVGLRYQPPGTNDLYSAALFDLKRQNYIS---YDANFMPTQKGEIAVRG 676 Query: 663 VELEA 667 +ELEA Sbjct: 677 LELEA 681 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 249 bits (637), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 187/552 (33%), Positives = 279/552 (50%), Gaps = 23/552 (4%) Query: 144 YAAKRTATATKTDTPIEEIPQSISVVTSDQITTTGARTLQDALGYTAGVSAEQGSYGVMT 203 Y T++AT+T+TP++E+PQS+ VV+ I A L D L Y +GV A Q ++G + Sbjct: 50 YRQSSTSSATRTETPLQELPQSVQVVSRQLIDDLAATRLDDVLLYVSGV-ARQNNFGGLW 108 Query: 204 SESFFIRGFEVQPYSG-GILRDGMKYQPNVYNGAQEVYGLEHVEVLKGASSILYGTAAPG 262 +++ IRGF G IL +G Y +++ +E V+ LKG ++ LYG + PG Sbjct: 109 -DNYSIRGFSGSENGGMNILWNGFASNRG-YAPPRDMANVESVDFLKGPAAALYGNSEPG 166 Query: 263 GLINAITKRPTAESLREINVEYGNHNRKQISGDISGPLDDAGELTYRLTALERKADSFAD 322 G IN +TK+P +S +++ G+++ + + D +G L + + YRL A S D Sbjct: 167 GTINVVTKKPQFKSANALDLSIGSNDAYRSAVDSTGAL--SSTVAYRLNAAMEHKGSMRD 224 Query: 323 FGKNDRTYLAAALTWSPSAATSLTLLSSYQHSKTTDNGPLPRQGTLLFNPN-GQLPGDRY 381 +++R + A A TW + T L + K PL R G + N N G LP R+ Sbjct: 225 QVRSEREFFAPAFTWLLTENTILNYEGEFLRQK----APLDR-GIVAVNGNAGVLPVSRF 279 Query: 382 LGEPSFNLFDNTQKTVSSIFEHAFSDTLKFRQSLRYFTSSLDYKYYQITGVGTDLRTVSR 441 LGEP+ + E ++ R + + SLD + + D T+ R Sbjct: 280 LGEPNDGDIKMQNQNHLLTLEQRLNENWHLRTGIFHKEGSLDGYSTEAFALQADNATL-R 338 Query: 442 RGRAFLD-STEAVTADTNLEYSFDTGPVAHKVLLG--VDYLTQRHTSDRANTTFTD---I 495 R R + D S + + F T V H+VL+G VD+LT R N + + Sbjct: 339 RQRRYRDYSWHDTSLQAEIGGKFATAGVGHEVLVGTEVDWLTLDQRMLRINPSNVAPYAV 398 Query: 496 DMYNPVYGQPFGSATDTDKWRLKQSGTGLYLQDQLKIADKWVLLVGGRQDWTRLEDRDLL 555 ++YNPVYGQ + T +Q TGLYLQDQL ++++W LL G R D R +L Sbjct: 399 NIYNPVYGQAQPTPTANTDTSERQISTGLYLQDQLSLSERWRLLAGVRADAFRSTLNNLR 458 Query: 556 NNPDGIVQTDK-AFSGRAGLVYLANNGLSPYVSFSQSFAPEEGFDRLRNAFKPTRGEQYE 614 N + + DK A+S R GL YL S YVS S+SF P G D NAF P E Sbjct: 459 NG--AVTRQDKHAYSPRLGLTYLLTPSWSVYVSASKSFRPNSGSDVSGNAFSPETSRAAE 516 Query: 615 VGLRYQTPDKKLLLSAAIYQLTQSNVQTPDPVDPDNFSVQTGEVRSRGVELEAKGALTKN 674 GL++Q+ DK+ + A++ +T+ NV T DP +P NFS+ GEVRS+GVEL+A L + Sbjct: 517 AGLKFQSEDKRSGATLAVFDITKQNVLTTDPANP-NFSIAAGEVRSKGVELDANARLGHH 575 Query: 675 LNIXARACATSA 686 + T A Sbjct: 576 WRVTGNLAYTDA 587 >gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 715 Score = 239 bits (610), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 192/583 (32%), Positives = 270/583 (46%), Gaps = 28/583 (4%) Query: 123 APLPLVTVHGAAETATSHVNGYAAKRTATATKTDTPIEEIPQSISVVTSDQITTTGARTL 182 A LP ++V E N Y A T+ AT+TDTP+ E+PQS+ V+T+ QI GA L Sbjct: 47 AALPEISVSAGREK-----NSYNAPSTSGATRTDTPLLELPQSVRVMTTQQIDDLGAVRL 101 Query: 183 QDALGYTAGVSAEQGSYGVMTSESFFIRGFEVQPYSGGILRDGMKYQPNVYNGAQEVYGL 242 D + Y +G+S G T ++F IRGF G L +G YN ++ + Sbjct: 102 ADTVDYVSGISRLNDFGG--TWDNFAIRGFSSTDM--GFLVNGFPGSRG-YNPRRDTATI 156 Query: 243 EHVEVLKGASSILYGTAAPGGLINAITKRPTAESLREINVEYGNHNRKQISGDISGPLDD 302 E +E LKG +S LYG++ PGG IN +TK+P + V G ++ + D +GPL Sbjct: 157 ERIEFLKGPASALYGSSEPGGTINIVTKKPQFSASNSAEVSAGTGGLRRATVDSTGPLSQ 216 Query: 303 AGELTYRLTALERKADSFADFGKNDRTYLAAALTWSPSAATSLTLLSSY-QHSKTTDNGP 361 L YRL A+ + DS + N R+ +A +L W T L + Q S D G Sbjct: 217 --NLAYRLIAMTEEGDSRSSLLSNRRSLVAPSLAWVIDKNTLLNYEGEFLQASTPLDRGI 274 Query: 362 LPRQGTLLFNPNGQLPGDRYLGEPSFNLFDNTQKTVSSIFEHAFSDTLKFRQSLRYFTSS 421 + +G L G LP DR L EPS T EH+ S+ + R Y SS Sbjct: 275 INVRGVL-----GGLPRDRVLSEPSDGNMAMRSNTHQLTLEHSLSEQWRMRLGASYKESS 329 Query: 422 LDYKYYQI---TGVGTDLRTVSRRGRAFLDSTEAVTADTNLEYSFDTGPVAHKVLLGVDY 478 D Y + + DLRT+ R G + ++ L F TG +AH L+G + Sbjct: 330 FDGYYTEAKLRNPLQADLRTLDRTGTWRQLPSRDMSIQGELHGQFKTGDIAHTFLVGAEA 389 Query: 479 LT-QRHTSDRANTTFTDIDMYNPVYGQPFGSATD-TDKWRLKQSGTGLYLQDQLKIADKW 536 +T +TT ID+YNP+YG + D T Q L++QDQL ++ +W Sbjct: 390 SKLWMNTEILRSTTLLPIDIYNPIYGAARPALDDRTSSSDENQRVKALFVQDQLSLSPQW 449 Query: 537 VLLVGGRQDWTRLEDRDLLNNPDGIVQTDKAFSGRAGLVYLANNGLSPYVSFSQSFAPEE 596 LL G R D + Q A S RAG+ YL N S Y+S +SF Sbjct: 450 KLLGGLRWDQYNQSVVSRVAPVGTTSQRQSAVSPRAGISYLPNAWSSVYLSAGKSFRGNS 509 Query: 597 GFDRLRNAFKPTRGEQYEVGLRYQTPDKKLLLSAAIYQLTQSNVQTPDPVDPDNFSVQTG 656 G D F P R YE GL+ Q+ D++L + A+Y +T++NV T D NF G Sbjct: 510 GVDVNGRPFDPQRSTSYEAGLKLQSTDERLGANFAVYDITKTNVLTTS--DNPNFMAAAG 567 Query: 657 EVRSRGVELEAKGALTKNLNIXARAC---ATSAAARAMPAACR 696 EV+S G E +A G L N + A A + R +P R Sbjct: 568 EVKSTGFEADAYGQLNANWRLSANFSWDDARVSKDRTLPTGTR 610 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,967,475 Number of extensions: 82123 Number of successful extensions: 267 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 19 Length of query: 703 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 611 Effective length of database: 1,184,250 Effective search space: 723576750 Effective search space used: 723576750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)