BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0010.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 229 8e-62 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 154 3e-39 gi|300312680|ref|YP_003776772.1| two component response regulato... 97 5e-22 gi|300310849|ref|YP_003774941.1| two component transcription reg... 93 6e-21 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 93 7e-21 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 229 bits (583), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 110/123 (89%), Positives = 115/123 (93%) Query: 7 TIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPEFAQEEMLVGPVT 66 IMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPE AQE M GP+T Sbjct: 98 VIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPEHAQEVMSAGPIT 157 Query: 67 LDPASCSVALNGDKIDIGHAEYKLLKFFMAHPDRVFSRSQLLDRVWGDHVVIEERTVDVH 126 LDPASCSV+L+G +IDIGHAEYKLLKFF+AHPDRVFSRSQLLDRVWGDHVVIEERTVDVH Sbjct: 158 LDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVWGDHVVIEERTVDVH 217 Query: 127 XSR 129 R Sbjct: 218 VLR 220 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 154 bits (388), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 69/123 (56%), Positives = 93/123 (75%) Query: 7 TIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPEFAQEEMLVGPVT 66 IMLTAK MEEDK+ GL+ GADDY+TKPFSP+EL AR++ALLRRK+PE + + ++ Sbjct: 82 VIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEIGSQALKYRDIS 141 Query: 67 LDPASCSVALNGDKIDIGHAEYKLLKFFMAHPDRVFSRSQLLDRVWGDHVVIEERTVDVH 126 +D V++ + + AE+KLL++ +AHP+R+FSR+QLLD+VWGDH IEERTVDVH Sbjct: 142 IDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVH 201 Query: 127 XSR 129 R Sbjct: 202 IMR 204 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 96.7 bits (239), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 81/125 (64%), Gaps = 6/125 (4%) Query: 7 TIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPEFAQEEMLVGPVT 66 ++LTA+ D++ GL+ GADDY+ KPF+ EL ARIKAL+RR +P+ AQ + VG ++ Sbjct: 73 VLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ--LTVGGLS 130 Query: 67 LDPASCSVALNGDKIDIGHAEYKLLKFFMAHPDRVFSRSQLLDRV--WGDHVVIEERTVD 124 LD A+ ++G KI++ E+ +L++ M H RV S+ Q++D V WG+ I V+ Sbjct: 131 LDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTIN--AVE 188 Query: 125 VHXSR 129 V+ SR Sbjct: 189 VYVSR 193 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 93.2 bits (230), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 7/130 (5%) Query: 8 IMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS---PEFAQEE---ML 61 IMLTA+ D+I GL+ GADDY+ KPF PREL ARI+++LRR P AQ + M Sbjct: 82 IMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVAAMR 141 Query: 62 VGPVTLD-PASCSVALNGDKIDIGHAEYKLLKFFMAHPDRVFSRSQLLDRVWGDHVVIEE 120 TLD A V +G + + AE++LLK F+ HP+RV +R QLL+ G + Sbjct: 142 FAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFD 201 Query: 121 RTVDVHXSRW 130 R+VD+ SR Sbjct: 202 RSVDIQISRL 211 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 92.8 bits (229), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 7/129 (5%) Query: 8 IMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKSPE-------FAQEEM 60 IMLTAK + D+I GL+ GADDY+ KPF+PREL ARI A+LRRK P+ E Sbjct: 93 IMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETF 152 Query: 61 LVGPVTLDPASCSVALNGDKIDIGHAEYKLLKFFMAHPDRVFSRSQLLDRVWGDHVVIEE 120 G LD + ++ NGD I + E+ +LK F + + SR +L++ G + + Sbjct: 153 EFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFD 212 Query: 121 RTVDVHXSR 129 R++DV SR Sbjct: 213 RSLDVQISR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 385,816 Number of extensions: 13867 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 23 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)