BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0257.0008.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310592|ref|YP_003774684.1| phosphate regulon two-component...   135   6e-34
gi|300310718|ref|YP_003774810.1| phosphate regulon two-component...    75   8e-16
gi|300313896|ref|YP_003777988.1| two component transcription res...    53   5e-09

>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component
          response regulator transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  135 bits (340), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 71/77 (92%), Gaps = 1/77 (1%)

Query: 1  MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNTAAAWEFVQRRAPQLVLLDWMLPDRSG 60
          MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSN AAAW+FVQ RAPQLVLLDWMLPDRSG
Sbjct: 21 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 80

Query: 61 LHLLSRIRXALREAEHL 77
          LHLLSRIR A R+ + L
Sbjct: 81 LHLLSRIR-ADRQLQQL 96


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component
          response regulator transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 75.5 bits (184), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 51/71 (71%)

Query: 4  ILIVEDEPSIAELIAFTLKEAGWSSFVVSNTAAAWEFVQRRAPQLVLLDWMLPDRSGLHL 63
          IL+VEDEPSIAEL+ FT++ AG+++ + ++ A A + +    P +VLLDWMLPD SGL L
Sbjct: 8  ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67

Query: 64 LSRIRXALREA 74
          L+ +R   R A
Sbjct: 68 LNELRRDQRTA 78


>gi|300313896|ref|YP_003777988.1| two component transcription
          response regulator protein [Herbaspirillum seropedicae
          SmR1]
          Length = 244

 Score = 52.8 bits (125), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 4  ILIVEDEPSIAELIAFTLKEAGWSSFVVSNTAAAWEFVQRRAPQLVLLDWMLPDRSGLHL 63
          ILIVEDEP +AEL+   L  AG+S+  V+   AA + V+ + P L+LLD MLP   G  +
Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77

Query: 64 LSRIR 68
            ++R
Sbjct: 78 CRQLR 82


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 262,127
Number of extensions: 8915
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 123 (52.0 bits)