BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0257.0006.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPas... 434 e-123 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 120 1e-28 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 115 4e-27 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 111 6e-26 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 108 4e-25 >gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 205/209 (98%), Positives = 208/209 (99%) Query: 22 KSTLLRTFNRMYDLYPGQRAEGKIMYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVY 81 KSTLLRTFNRMYDLYPGQRAEGKI+YAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVY Sbjct: 64 KSTLLRTFNRMYDLYPGQRAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVY 123 Query: 82 DNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGV 141 DNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKL+KSGLSLSGGQQQRLCIARGV Sbjct: 124 DNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGV 183 Query: 142 AVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLG 201 AVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLG Sbjct: 184 AVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLG 243 Query: 202 ELMEFGETDQIFMNPARKETQDYITGRFG 230 EL+EFGETDQIFMNP RKETQDYITGRFG Sbjct: 244 ELVEFGETDQIFMNPVRKETQDYITGRFG 272 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 11/206 (5%) Query: 22 KSTLLRTFNRMYDLYPGQRAEGKIMYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSV 80 KST LR N + ++ ++G I G + +P +LN LRA++GMVFQ+ FP M+V Sbjct: 40 KSTFLRCLNGLEEV-----SDGDIFIEGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTV 94 Query: 81 YDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARG 140 +N+ + L + E E L K L DK++ LSGGQQQR+ IAR Sbjct: 95 LENLIMAPMQVKKLSRREAVLVAEKLLQKVGLL----DKIDAFPNQLSGGQQQRVAIARA 150 Query: 141 VAVKPEVLLLDEPTSALDPISTAKVEELIGELKND-YTIAIVTHNMQQAARCSDYTAYMY 199 +A++P+V+L DEPTSALDP +V ++ +L + T+ +VTH M A SD ++ Sbjct: 151 LAMEPKVMLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFID 210 Query: 200 LGELMEFGETDQIFMNPARKETQDYI 225 G +ME G Q+ +P + T+D++ Sbjct: 211 QGVIMEEGPPQQVLGDPHHERTRDFL 236 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 11/206 (5%) Query: 22 KSTLLRTFNRMYDLYPGQRAEGKIMYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPM-SV 80 KST+LR N + G I+ G + G D++ LR +VGMVFQ+ FP +V Sbjct: 40 KSTVLRCINGLESY-----ERGDILIDGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTV 94 Query: 81 YDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARG 140 +N+ G L + + L+K L + + LSGGQQQR+ IAR Sbjct: 95 LENVTEGPIYVNGLARAQARSEAMSLLDKVGLAA----RCDAYPAQLSGGQQQRVAIARS 150 Query: 141 VAVKPEVLLLDEPTSALDPISTAKVEELIGELKND-YTIAIVTHNMQQAARCSDYTAYMY 199 +A++PE +L DEPTSALDP +V ++ L D T+ +VTH M A +D +++ Sbjct: 151 LAMQPEAILFDEPTSALDPELVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLH 210 Query: 200 LGELMEFGETDQIFMNPARKETQDYI 225 G ++E G Q+ P TQD++ Sbjct: 211 SGSIVESGAAAQVLAEPQHARTQDFL 236 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 111 bits (277), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 11/206 (5%) Query: 22 KSTLLRTFNRMYDLYPGQRAEGKIMYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSV 80 KST+LR N + + G I AG+ + + L LR VGMVFQ FP ++V Sbjct: 42 KSTMLRCINGLETI-----DGGSITVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTV 96 Query: 81 YDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARG 140 +NI R+ + E L + L K + LSGGQQQR+ IAR Sbjct: 97 EENIMLSPRIVKKTATETARETAIKVLKQVGL----DHKRDAYPEQLSGGQQQRVAIARS 152 Query: 141 VAVKPEVLLLDEPTSALDPISTAKVEELIGEL-KNDYTIAIVTHNMQQAARCSDYTAYMY 199 +A++P+V+L DE TSALDP TA+V +++ EL + T+ +VTH M+ A R +D T +M+ Sbjct: 153 LAMEPQVMLFDEVTSALDPELTAEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMH 212 Query: 200 LGELMEFGETDQIFMNPARKETQDYI 225 G++ E +++ F +P E + +I Sbjct: 213 QGKVWEARPSEEFFADPQTPEARQFI 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 108 bits (270), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 115/208 (55%), Gaps = 12/208 (5%) Query: 22 KSTLLRTFNRMYDLYPGQRAEGKIMYAGNNILEPGQ-DLNMLRAKVGMVFQKPTPFP-MS 79 KSTLLR N + + G I G++I P + +L LR +VG+VFQ FP ++ Sbjct: 43 KSTLLRCLNGLEKVDAGD-----IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLT 97 Query: 80 VYDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIAR 139 V NI + + + E+ + +K +++K + LSGGQ QR+ IAR Sbjct: 98 VERNITLALTTIKKMST----EQAKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIAR 153 Query: 140 GVAVKPEVLLLDEPTSALDPISTAKVEELIGEL-KNDYTIAIVTHNMQQAARCSDYTAYM 198 +A+ PE++L DE TSALDP TA+V +++ +L + T+ +VTH M A + +D +M Sbjct: 154 SLAMAPELMLFDEVTSALDPELTAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFM 213 Query: 199 YLGELMEFGETDQIFMNPARKETQDYIT 226 + G++ E G D++F +P E Q +++ Sbjct: 214 HQGQVWEIGPPDELFSHPKTAELQKFVS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 679,991 Number of extensions: 27171 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 94 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 97 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)