BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0007.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...   136   2e-33
gi|300313976|ref|YP_003778068.1| hydroxymethylglutaryl-CoA lyase...    88   5e-19

>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  136 bits (342), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 4/150 (2%)

Query: 96  LLAGADDPAFEHNDXA----DLADDPAFEHNDGRVQQVALLDAAIAGWTSLHGMEHVLAV 151
           ++AG  D  F+    A    D+A+DP    NDGRV +   +DAAI  W S   +E  LA 
Sbjct: 266 VIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAIQQWCSTQTIETALAT 325

Query: 152 LEQAGVPSGRIYSIADIVADPHYQARDMILSAQLPGGVKVKMPGIVPKLSDTPGEIRWQG 211
           L+ A VP G+IYS+ D++ D  + ARDM    Q   G  VK+PGI PK+S+TPG+ +W G
Sbjct: 326 LQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGITPKMSETPGQTKWLG 385

Query: 212 PALGAHTVEVLSGLGLDEAEIRRLQQEGVV 241
           P LGAH+ E+L  LG DEA I+ L+ +GVV
Sbjct: 386 PELGAHSDEILQSLGYDEAHIKMLRDQGVV 415


>gi|300313976|ref|YP_003778068.1| hydroxymethylglutaryl-CoA lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 88.2 bits (217), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 60/96 (62%)

Query: 7   NDANRLIVQEVAPRDGLQIEPVWVPTEDKIALVDGLSQAGFTRIEAGSFVSPKAIPALRD 66
           N   ++ + EV PRDGLQ E   +  E KI LV+ L+ AGF  +EA SFVSPK +P +  
Sbjct: 2   NLPKKVKIVEVGPRDGLQNEKDTISAEVKIELVNRLAAAGFPNVEAASFVSPKWVPQMAT 61

Query: 67  GDEVFRRIVRKDGVTYVALIPNLKGAERALLAGADD 102
             EV   I R+ GV Y AL+PN+KG E AL AG D+
Sbjct: 62  SAEVMHGITRRPGVVYSALVPNMKGFEAALEAGVDE 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,642
Number of extensions: 40335
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)