BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0004.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312545|ref|YP_003776637.1| iron-regulated membrane protein...    64   9e-12
gi|300311427|ref|YP_003775519.1| signal transduction histidine k...    59   3e-10

>gi|300312545|ref|YP_003776637.1| iron-regulated membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 546

 Score = 63.9 bits (154), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 25  DQNARWTVVIAVLAVLIALALGLSIVQWVVRDVRRLSRARARGPDRLRPLFPKLPAGQTG 84
           D   RW   +  L+  + +A G  +  W V+  ++ ++A A+G    RP          G
Sbjct: 350 DPWLRWLFFLCGLSGYLMVASGALL--WAVKTRQKEAKAIAQGA---RP----------G 394

Query: 85  FGLRLVERGNTACIAGLLAALPAFFLANRLLPLDMAQRSEWEIHCFFLCWGAA 137
           +GLRLV+  N   IAGL  A  ++F ANRLLPL+M QR + EI+ FF+ W  A
Sbjct: 395 WGLRLVDALNIGAIAGLPIAFASYFWANRLLPLEMTQRPQAEINVFFIAWAVA 447


>gi|300311427|ref|YP_003775519.1| signal transduction histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 560

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 3   DGAGLSWVTVVAVPRSDFLDTLDQNARWTVVIAVLAVLIALALGLSIVQWVVRDVRRLSR 62
           D AGL W+ + A PRSDFL ++      T+++ ++AV +   +G  +++WV+RD+RRL++
Sbjct: 304 DAAGLDWLAISAAPRSDFLGSVTSGVYQTLMLGLMAVCLTFVIGFLLLRWVLRDIRRLTQ 363

Query: 63  A 63
           A
Sbjct: 364 A 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 530,142
Number of extensions: 14663
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)