BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0002.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 155 2e-39 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 154 6e-39 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 117 1e-27 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 106 2e-24 gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho... 85 7e-18 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 155 bits (393), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 137/239 (57%), Gaps = 6/239 (2%) Query: 20 TGRIGTVYLFESGWAPYVSLSTSFTPEIGRDVTGQLLKPSTGRQVEAGLRYQPDNARFSY 79 +GR+G YL APYVS +SF P+ G+DV G+ K +T RQ+EAG++YQP + R Y Sbjct: 597 SGRVGLSYLVSPELAPYVSYGSSFLPQAGQDVDGKPFKAATARQIEAGVKYQPGHGRAVY 656 Query: 80 TASIFNLVRNNVSTTAPQDPDGVVQTGEVKSQGLELEARAEIARNLSIVAQYTYLDTEIT 139 TA+++ LV++N + P + V G+V+S+G+ELEA+ E+ L++ A YTY T Sbjct: 657 TAALYQLVKDNALGSDPLHANFSVSNGQVRSRGVELEAKGELLPGLNVTAAYTYAQVVNT 716 Query: 140 QSNNGDR-GLAQPGAARHSASVWTKYSFNLNDATRAYSGLGLRYLGKARSYQDSANRNVT 198 Q+ + G R +AS+W Y+ D G G RY G R+Y +AN V Sbjct: 717 QNAAPELIGKTPILVPRQAASLWLDYTVQRGDLAGMGVGAGARYTG--RNYATAAN-TVE 773 Query: 199 NPAFGLLDAALGLEQGPWRLSLNVNNLLNRQL--LLDCDGTFCYRNAERTINVSSSYRF 255 N A +LDA + +++GPWR + NV+NL NRQ L C+ ERT +S+ YR+ Sbjct: 774 NAAQVILDAMVRIDRGPWRYAFNVSNLANRQYTSCLAEPTLTCFWAPERTAVLSARYRW 832 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 154 bits (390), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 133/242 (54%), Gaps = 6/242 (2%) Query: 17 SKTTGRIGTVYLFESGWAPYVSLSTSFTPEIGRDVTGQLLKPSTGRQVEAGLRYQPDNAR 76 S +GRIG YL APYVS +TSF P+ G D G+ P+ RQ E G++YQP + + Sbjct: 467 SALSGRIGLSYLVTRDIAPYVSYATSFLPQTGSDFNGKPFDPTKARQAEVGIKYQPADGK 526 Query: 77 FSYTASIFNLVRNNVSTTAPQDPDGVVQTGEVKSQGLELEARAEIARNLSIVAQYTYLDT 136 +TA++F L + NV T P + V +GE+KS+GLELEA+ EI + L++ A YTY D Sbjct: 527 TLFTAALFELTKTNVQTPDPAHTNFNVLSGEIKSRGLELEAKGEIVKGLNLSASYTYTDV 586 Query: 137 EITQSNNGDRGLAQPG-AARHSASVWTKYSFNLNDATRAYSGLGLRYLGKARSYQDSANR 195 + TQ+N QP R +ASVW Y+ A G G RY G +Y D+AN Sbjct: 587 KNTQNNTASLLGKQPILVPRQAASVWADYTVQGGPLAGAGIGGGARYTGS--NYADAAN- 643 Query: 196 NVTNPAFGLLDAALGLEQGPWRLSLNVNNLLNRQL--LLDCDGTFCYRNAERTINVSSSY 253 V N + DA WR +LN++N+ N++ L T C+ AERT +S+ Y Sbjct: 644 TVKNGGVTVFDAVFHYNLNRWRYALNISNITNKEYTSCLAEPTTTCFWAAERTAILSARY 703 Query: 254 RF 255 R+ Sbjct: 704 RW 705 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 15/249 (6%) Query: 13 SQSASKTTGRIGTVYLFESGWAPYVSLSTSFTPEIGRD-VTGQLLKPSTGRQVEAGLRYQ 71 S + K T R +Y +G APY+S + SF P + +T Q P TG+Q E GLRYQ Sbjct: 578 SSTDRKFTRRAAVLYHAANGLAPYLSYTESFNPTATVNPLTNQSFGPETGKQTEVGLRYQ 637 Query: 72 PDNARFSYTASIFNLVRNN-VSTTAPQDPDGVVQTGEVKSQGLELEARAEIARNLSIVAQ 130 P Y+A++F+L R N +S A P Q GE+ +GLELEA + L + A Sbjct: 638 PPGTNDLYSAALFDLKRQNYISYDANFMP---TQKGEIAVRGLELEAVTQPMAALRLTAA 694 Query: 131 YTYLDTEITQSNNGDRGLAQPGAA--RHSASVWTKYSFNLNDATRAYSGLGLRYLGKARS 188 Y+Y + +++ + + AA H SVW + L + R GLG RY+ Sbjct: 695 YSYTPRAVVTASSRPAEIGKQAAAVLLHQFSVWGDH--RLGNGVRL--GLGARYVSATSG 750 Query: 189 YQDSANRNVTNPAFGLLDAALGLEQGPWRLSLNVNNLLNRQLLLDCDGT--FCYRNAERT 246 + V P + LLD LG + W L+LN+ NL +++ L +CD T CY +R+ Sbjct: 751 --NGGGTPVKVPGYTLLDGLLGYDFARWSLALNLRNLTDKRYLTNCDTTASMCYYGDQRS 808 Query: 247 INVSSSYRF 255 + ++SYR+ Sbjct: 809 VLATASYRW 817 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 8/211 (3%) Query: 22 RIGTVYLFESGWAPYVSLSTSFTPEIGRDVTGQLLKPSTGRQVEAGLRYQPDNARFSYTA 81 R+G YL W+ YVS S SF P G DV+G P T R EAGL++Q ++ R T Sbjct: 473 RLGLTYLLTPSWSVYVSASKSFRPNSGSDVSGNAFSPETSRAAEAGLKFQSEDKRSGATL 532 Query: 82 SIFNLVRNNVSTTAPQDPDGVVQTGEVKSQGLELEARAEIARNLSIVAQYTYLDTEITQS 141 ++F++ + NV TT P +P+ + GEV+S+G+EL+A A + + + Y D +++ Sbjct: 533 AVFDITKQNVLTTDPANPNFSIAAGEVRSKGVELDANARLGHHWRVTGNLAYTDAYVSRD 592 Query: 142 NNGDRGLAQPGAARHSASVWTKYSFNLNDATRAYSGL--GLRYLGKARSYQDSANRNVTN 199 N G R SAS+ F DA A G+ GL Y+G+ Q + Sbjct: 593 NTLPVGSRLVNIPRSSASLLA--VFEDADAHGAPYGVGGGLNYVGRRTGDQAGS---FML 647 Query: 200 PAFGLLDAALGLEQGP-WRLSLNVNNLLNRQ 229 P++ A + P +LSL+VNNL N++ Sbjct: 648 PSYVTARALAYWQFTPKMKLSLDVNNLFNKR 678 >gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 796 Score = 84.7 bits (208), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 24/258 (9%) Query: 3 PAAGTSTETYSQSASKTTGRIGTVYLFESGWAPYVSLSTSFTPEIGRDVTGQLLKPSTGR 62 P+ G YS S +G +Y APYV+ + F P G LL P Sbjct: 558 PSGGMHQTAYSPS-------LGLMYQLTPEIAPYVNWNKGFQPNNVTAYGGGLLAPKQSE 610 Query: 63 QVEAGLRYQPDNARFSYTASIFNLVRNNVSTTAPQDPDGVVQTGEVKSQGLELEARAEIA 122 Q EAG+++ + + T +++++ N S + P + TG SQGLE+E + +I Sbjct: 611 QFEAGVKFNLMDDKLELTTALYHIDYTNQSISDPVHRGFYISTGGAVSQGLEVELKGQIM 670 Query: 123 RNLSIVAQYTYLDTEITQSNNGDRGLA---QPGAARHSASVWTKYSFNLNDATRAYS-GL 178 L+++AQY Y NN + A + H+ S+WT Y+F + A + + G+ Sbjct: 671 PGLNVIAQYAY--------NNYVQDYAPTVKVNLPHHTGSIWTTYNFR-SPALQGFGVGM 721 Query: 179 GLRYLGKARSYQDSANRNVTNPAFGLLDAALGLEQGPWRLSLNVNNLLNRQLL-LDCDGT 237 G+ ++ + + N +V P D L + + L+L+V NL N +L + Sbjct: 722 GV-FMSSGQDVGSTGNYHV--PGQTETDLGLFYKMEKYSLNLSVKNLFNHKLYSSSTSAS 778 Query: 238 FCYRNAERTINVSSSYRF 255 F ERT+ ++ +Y F Sbjct: 779 FIPMGPERTLMLTGTYDF 796 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 735,933 Number of extensions: 28585 Number of successful extensions: 94 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 11 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)