BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0031.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310358|ref|YP_003774450.1| methionine aminopeptidase [Herb...   392   e-110
gi|300311492|ref|YP_003775584.1| methionine aminopeptidase [Herb...   327   7e-91

>gi|300310358|ref|YP_003774450.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  392 bits (1008), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 220/261 (84%)

Query: 4   EVEIKTPADIAMLRTSGALAAKVLEMIAEHVRPGVTTNQLDRICHDYIVDVLDAVPVNIG 63
           +V+++  A+IA  R +G LAA+VL ++AEHV+ GVTT++LDRICHD+IV V  A P NIG
Sbjct: 3   KVKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVQVQKATPANIG 62

Query: 64  YNGYPKTICTSVNHVICHGIPSDRALKDGDIVNIDVALTKDGWHGDTSRMYFVGEPGILA 123
           Y+G+PKTIC+SVN VICHGIP  + LKDGDI+NIDVA+ KDGW+GD SRMYFVG P   A
Sbjct: 63  YHGFPKTICSSVNEVICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNATA 122

Query: 124 KRLVTATYEAMRAGILAVRPGATLGDIGHAIQSVAHKEGFSVVREYCGHGIGRIYHEDLQ 183
           ++LV  TYEAM AGI AVRPGATLGD+GHAIQ+VA ++GFSVVREYCGHGIG +YH++ Q
Sbjct: 123 RKLVNTTYEAMCAGIRAVRPGATLGDVGHAIQTVAQRDGFSVVREYCGHGIGTVYHDEPQ 182

Query: 184 ILHYGQPGAGLPLQTGMVFTIEPMINAGKRHSKEMPDGWTVVTKDHSLSAQWEHMVAVTD 243
           +LHYGQ  AGLPL+ GM+FTIEPM+NAGKRH++++ DGWTVVT D SLSAQWEHMV VT 
Sbjct: 183 VLHYGQRNAGLPLKEGMIFTIEPMLNAGKRHTEQLDDGWTVVTADGSLSAQWEHMVVVTS 242

Query: 244 TGFEVLTPWPDGVGEYSALAS 264
            G+E+LTPWPDG G+Y A+A+
Sbjct: 243 KGYEILTPWPDGFGDYPAIAT 263


>gi|300311492|ref|YP_003775584.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  327 bits (838), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 151/254 (59%), Positives = 194/254 (76%), Gaps = 5/254 (1%)

Query: 5   VEIKTPADIAMLRTSGALAAKVLEMIAEHVRPGVTTNQLDRICHDYIVDVLDAVPVNI-- 62
           + IKT  DI  +R +G LAA+VL+ I   V+PGVTT ++DR+CH+Y+ +V  ++P  +  
Sbjct: 4   ITIKTAEDIEGMRVAGRLAAEVLDYITPFVKPGVTTGEIDRLCHEYMTNVQGSIPAPLNY 63

Query: 63  ---GYNGYPKTICTSVNHVICHGIPSDRALKDGDIVNIDVALTKDGWHGDTSRMYFVGEP 119
              GY  YPK ICTS+N VICHGIP D+ +K+GD++NIDV + KDG+HGDTSRM+F+GEP
Sbjct: 64  CPPGYTPYPKAICTSLNDVICHGIPGDKVMKNGDVLNIDVTIIKDGYHGDTSRMFFLGEP 123

Query: 120 GILAKRLVTATYEAMRAGILAVRPGATLGDIGHAIQSVAHKEGFSVVREYCGHGIGRIYH 179
            ILA+RL   TYE M  GI  ++PGA LGDIGH IQ  A K G+SVVRE+CGHGIG+++H
Sbjct: 124 SILARRLTEITYECMWLGISKIKPGAHLGDIGHVIQQHAEKAGYSVVREFCGHGIGKVFH 183

Query: 180 EDLQILHYGQPGAGLPLQTGMVFTIEPMINAGKRHSKEMPDGWTVVTKDHSLSAQWEHMV 239
           E+ Q+LHYG+PG    L+ GM+FT+EPMINAG+R  +EM DGWT+ TKD SLSAQWEH V
Sbjct: 184 EEPQVLHYGRPGTLEKLEAGMIFTVEPMINAGRREIREMGDGWTIKTKDRSLSAQWEHTV 243

Query: 240 AVTDTGFEVLTPWP 253
            VT+TGFEVLT  P
Sbjct: 244 LVTETGFEVLTVSP 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 912,028
Number of extensions: 39731
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)