BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0025.p
         (861 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313711|ref|YP_003777803.1| DNA helicase [Herbaspirillum se...    84   7e-17

>gi|300313711|ref|YP_003777803.1| DNA helicase [Herbaspirillum
           seropedicae SmR1]
          Length = 857

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 178/414 (42%), Gaps = 49/414 (11%)

Query: 83  PTSAGKTRSVEIILRSAF-LSDRTRVAVLVAPFRALCHEIATSLRHAFKG-EDVKVNELS 140
           PTSAGK+  +++ L+S    SDR      V P R+L HE+  SL  AF G E+  V  +S
Sbjct: 161 PTSAGKSFLIQLYLKSLLGNSDRLLDIAYVVPTRSLIHEVHASLIKAFTGFENPPV--IS 218

Query: 141 DALQLDFSEQLAELFGQAAPTTRHLMVLTPEKFLYVLRQEPSLVAHIGLVVYDEGHQFDT 200
              + D  E+LA        T   + V T E+ L     E  L   +  ++ DE  Q   
Sbjct: 219 SIPRAD--ERLA-------ATQSRIFVFTQER-LRTAMDEADLA--LDCLIVDEAQQIAD 266

Query: 201 GPRGITYELLLTEIKGLLQES--AQTVLISAVIRNAQAVGTWL-IGNEPNVVDGSGLLST 257
           G RG+   LLL+ ++ + + +  AQ + I+   R+  ++G+ + +G  P+V   + L   
Sbjct: 267 GSRGM---LLLSCLEDVNERAPQAQILFITPGSRSGASIGSLMGLGELPSV--ETTLRPV 321

Query: 258 ARSVAFATW-SERLGQLLFFESDNYMHPDYFVPRSIEAEELESRPRERTKRVFPQKGTDA 316
            +++ +  + S +  Q L       +H +   P ++E  +LE  P       F       
Sbjct: 322 RQNLIYVNFKSAKKKQHLQLT----LHRENQKPLALENVDLEGEPVSNAGARF------- 370

Query: 317 WKDVSLYLGIRLAPSGAVAVFCGRKDTASGLAERAVEIYERGFKLPAPALASDASETQ-R 375
                L   + L   G   V+      ASG A            L         +E    
Sbjct: 371 -----LTAVMTLGDEGQNLVY------ASGKAAAEKMAEAIAAALGGKDNFVKQTEALLE 419

Query: 376 LTHLATQNFGPDSMVAKAAALGVFVHHGTTPQGLRLSIEHAMQSELIKLVICTSTLAQGV 435
           L+    ++  P   +  +   GV  H+G+ P  L  +IE    +  +K ++CTSTL QGV
Sbjct: 420 LSEFVKKHVHPQYALVDSIKSGVAYHYGSMPTTLTKAIEEYFANGALKYLVCTSTLLQGV 479

Query: 436 NLPIRYLIVSGVNQGAER-IKTRDFQNLIGRAGRAGMHTEGLVLFADPKVIDNK 488
           NLP R + +    +G  + +   DF NL GRAGR    T G V   + K  D +
Sbjct: 480 NLPARNIFIRNPKKGMGKPMGPDDFWNLAGRAGRLSKDTHGNVFLIEYKKWDRQ 533


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,628,867
Number of extensions: 110029
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 1
Length of query: 861
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 768
Effective length of database: 1,179,515
Effective search space: 905867520
Effective search space used: 905867520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)