BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0022.p
         (491 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313843|ref|YP_003777935.1| Type I restriction-modification...   100   2e-22

>gi|300313843|ref|YP_003777935.1| Type I restriction-modification
           system methyltransferase subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 860

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 39/279 (13%)

Query: 1   MGLVFEHLIRKFAESANDTAGEFFTPRDVVRLATTLVFSTDHDALTGEGVIRTAYDCAAG 60
           +G ++E+LI  FA +A   AGEF+TP +V  L + ++     D  T +      YD  +G
Sbjct: 165 LGFIYEYLISMFAANAGKKAGEFYTPHEVSVLMSEIIAHHLKDRKTIQ-----IYDSTSG 219

Query: 61  TGGFLSTAMEQVKEWNPNAKIIPY-AQELNPETYAICVADKLIQGYDTKNIKLGN--TLS 117
           +G  L    + + +   +   I Y AQEL   TY +   + +++G    NI   N  TL 
Sbjct: 220 SGSLLLNIGQAIAKHMVDKDNIKYFAQELKENTYNLTRMNLVMRGILPSNIVTRNADTLE 279

Query: 118 ND-----------QLRNERFDYCLANPPFGVKWEKVQKDVQAEHVNDGYGGRFGPGLPRV 166
           +D                  D  ++NPP+  KW+   K+    +       RFG      
Sbjct: 280 DDWPYFDDQDPVNSYNPLYLDAVVSNPPYSQKWDPEHKEADPRY------ARFGLAPKSK 333

Query: 167 GDGSLLFLMHLLSKRKPVDANSNGTRIGIVLSGSPLFNGGAGSGESEIRRWILENDWLEA 226
            D +  FL+H L   KP     +G  + IVL    LF GG    E  IR+ ++EN+ LE 
Sbjct: 334 ADYA--FLLHDLYHLKP-----DGI-MAIVLPHGVLFRGGE---EGAIRKTLIENNHLET 382

Query: 227 IVALPNDLFYNTGIGTYIWVLSNNKAADRKNLVQLIDAT 265
           I+ LP+++F+ TGI T I VL   + +     V ++DA+
Sbjct: 383 IIGLPSNIFFGTGIPTIILVLRQKRESSD---VLIVDAS 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,599,524
Number of extensions: 70767
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,198,455
Effective search space: 481778910
Effective search space used: 481778910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)