BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0008.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillu...   670   0.0  
gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillu...   553   e-159

>gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillum
           seropedicae SmR1]
          Length = 549

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/365 (92%), Positives = 353/365 (96%)

Query: 1   MDKVGKEGVITVEDGKSLENELDIVEGMQFDRGYLSPYFINNQEKQVVALENPFVLLFDK 60
           M+KVGKEGVITVEDGKSLENELDIVEGMQFDRGYLSPYFINNQEKQ+VAL+NPF+LLFDK
Sbjct: 166 MEKVGKEGVITVEDGKSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDK 225

Query: 61  KVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRR 120
           K+SNIRDLLP+LEQVAKAGRPLLI+AEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRR
Sbjct: 226 KISNIRDLLPVLEQVAKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRR 285

Query: 121 KAMLEDIAILTGGQVIAEEVGLTLEKATLAELGQAKRIEIGKENTTIIDGNGEAIAIEAR 180
           KAMLEDIAILTGGQVIAEEVGLTLEKATLAELGQAKR+EIGKENTTIIDGNGEA  IEAR
Sbjct: 286 KAMLEDIAILTGGQVIAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEAR 345

Query: 181 VKQIRAQIEEATSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRA 240
           V  IR QI EATSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRA
Sbjct: 346 VAMIRTQIGEATSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRA 405

Query: 241 AVEEGVVPGGGVALLRARANVKNLKGDNADQEAGIKIVLRAVEEPLRQIVFNAGDEPSVV 300
           AVEEGVVPGGGVALLRARANVK+LKGDN DQEAGIKIVLRA+EEPLRQIVFNAGDEPSVV
Sbjct: 406 AVEEGVVPGGGVALLRARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVV 465

Query: 301 INAVLAGSGNYGYNAANGTYGDLVELGVLDPAKVTRSALQNAASVAGLILTTDALVAELP 360
           +N VL GSGN+GYNA+NGTYGDLVELGVLDPAKVTRSALQNAASVA LILTTDALVAE+ 
Sbjct: 466 VNKVLEGSGNFGYNASNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEVA 525

Query: 361 EDKAA 365
           EDK A
Sbjct: 526 EDKPA 530


>gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillum
           seropedicae SmR1]
          Length = 540

 Score =  553 bits (1425), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/356 (76%), Positives = 315/356 (88%)

Query: 1   MDKVGKEGVITVEDGKSLENELDIVEGMQFDRGYLSPYFINNQEKQVVALENPFVLLFDK 60
           MDKVGKEGVITVEDGKSLENELD+VEGMQFDRGYLSPYFIN+ +KQ+  L++P VLL+DK
Sbjct: 166 MDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDK 225

Query: 61  KVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRR 120
           K+S+IR+LLP+LE  AKAG+PL I+AED++GEALATLVVN++RG+LK AAVKAPGFGDRR
Sbjct: 226 KISSIRELLPVLEMTAKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRR 285

Query: 121 KAMLEDIAILTGGQVIAEEVGLTLEKATLAELGQAKRIEIGKENTTIIDGNGEAIAIEAR 180
           KAMLED+A+LTGG VI+EE G +LEK  L +LG AKR+E+ K++TT+IDG G    I+AR
Sbjct: 286 KAMLEDLAVLTGGTVISEETGKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDAR 345

Query: 181 VKQIRAQIEEATSDYDREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRA 240
           VK I+AQIEE TSDYDREKLQERVAKLAGGVA+IK+GAATEVEMKEKK RV+DALHATRA
Sbjct: 346 VKAIQAQIEETTSDYDREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRA 405

Query: 241 AVEEGVVPGGGVALLRARANVKNLKGDNADQEAGIKIVLRAVEEPLRQIVFNAGDEPSVV 300
           AVEEG+VPGGGVALLRARA +  L+G NADQ AGI+IVLRA+E PLR I  NAGDEPSVV
Sbjct: 406 AVEEGIVPGGGVALLRARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVV 465

Query: 301 INAVLAGSGNYGYNAANGTYGDLVELGVLDPAKVTRSALQNAASVAGLILTTDALV 356
           +  V +G GN+GYNAANG YGD+VELGV+DP KVTR+ALQNAASVA LILTTDA V
Sbjct: 466 VAKVYSGKGNFGYNAANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATV 521


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 934,901
Number of extensions: 34552
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)