BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0006.p (324 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 534 e-153 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 253 2e-68 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 249 3e-67 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 148 5e-37 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 142 4e-35 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 534 bits (1376), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/315 (85%), Positives = 284/315 (90%), Gaps = 13/315 (4%) Query: 10 VRTINLLNRPTEGKIILDGKDMTTLSADDLRDARRHIGMIFQHFNLLSSRTVYDNIALPL 69 VRT+NLLNRPT G+I+LDG+D+T+LSA LR+ARR IGMIFQHFNLLSSR+VYDNIALPL Sbjct: 44 VRTLNLLNRPTSGRIVLDGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPL 103 Query: 70 ELAGLSKAEIAKKVEPLLELVGLTALKDRYPAQISGGQKQRVGIARALANDPKVLLSDEA 129 ELAG SKAEIA KVEPLLELVGLTAL+DRYPAQISGGQKQRVGIARALANDPKVLLSDEA Sbjct: 104 ELAGKSKAEIAAKVEPLLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEA 163 Query: 130 TSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKVICDRVAVMEAGEVIEQGEVLD 189 TSALDPETTRSILELLRKINKELGLTIVLITHQMEVIK ICDRVAVMEAG+VIEQGEVLD Sbjct: 164 TSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLD 223 Query: 190 VFREPKHEVTRALIGDVIAHELPKGVLERLRARGXCPRAYWSACARLANTEAGSGTDHLF 249 VFR+P+HEVTRALIGDVIAHELPKGVL RLR RLA +AG GTDHLF Sbjct: 224 VFRQPRHEVTRALIGDVIAHELPKGVLARLR-------------ERLARADAGQGTDHLF 270 Query: 250 RFAFTGSGVDQPHLSEAVRRFDLDFNILHGQIDEIQGQAFGSLAILANGTAENITNAMNY 309 RFAFTG+ VDQPHLSEAVRRF+LDFNILHGQIDEIQGQAFGSLAILANGT +NI AM Y Sbjct: 271 RFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAILANGTQDNINQAMQY 330 Query: 310 LRAQGVVVEELNHVI 324 LR QGVVVEELNHVI Sbjct: 331 LREQGVVVEELNHVI 345 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 253 bits (645), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/307 (44%), Positives = 196/307 (63%), Gaps = 25/307 (8%) Query: 10 VRTINLLNRPTEGKIILDGKDMTTLSADDLRDARRHIGMIFQHFNLLSSRTVYDNIALPL 69 +RT+N+L RP G++++DG+D+T L + L R+ +GM+FQHFNLL+++TV NI PL Sbjct: 48 IRTLNVLERPDSGRVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPL 107 Query: 70 ELAG-LSKAEIAKKVEPLLELVGLTALKDRYPAQISGGQKQRVGIARALANDPKVLLSDE 128 ++ G S+ E A +V+ LL+LVGL A +D+YP+Q+SGGQKQRVGIARALAN P++LL DE Sbjct: 108 KITGRYSREERAARVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDE 167 Query: 129 ATSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKVICDRVAVMEAGEVIEQGEVL 188 ATSALDPETT+SIL LL +IN++LGLTIVLITH+MEVI+ ICDRVAV++ G V EQG V+ Sbjct: 168 ATSALDPETTQSILRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVV 227 Query: 189 DVFREPKHEVTRALIGDVIAHELPKGVLERLRARGXCPRAYWSACARLANTEAGSGTDHL 248 D+F P+H VTR+L+ A + + + +R R G L Sbjct: 228 DIFLRPQHAVTRSLLTQSHAWDAGESLYQR-RPDG-----------------------KL 263 Query: 249 FRFAFTGSGVDQPHLSEAVRRFDLDFNILHGQIDEIQGQAFGSLAILANGTAENITNAMN 308 R + G QP LS+ I+ G + I+ +G L + +G A+ + ++ Sbjct: 264 VRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIKDTPYGQLLVEFSGDADALAQVLD 323 Query: 309 YLRAQGV 315 L+ + Sbjct: 324 RLQTSDI 330 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 249 bits (635), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 136/285 (47%), Positives = 180/285 (63%), Gaps = 18/285 (6%) Query: 10 VRTINLLNRPTEGKIILDGKDMTTLSADDLRDARRHIGMIFQHFNLLSSRTVYDNIALPL 69 +RTIN L RPT G++ +D D+ TL L RR IGMIFQHFNLL+++TV+DNIALPL Sbjct: 85 LRTINRLERPTSGRVEVDDVDLATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPL 144 Query: 70 ELAGLSKAEIAKKVEPLLELVGLTALKDRYPAQISGGQKQRVGIARALANDPKVLLSDEA 129 +AG+ +A+I ++V LL LVGL D YP ++SGGQKQRVGIARALA+ P++LL DEA Sbjct: 145 RVAGVPRAQITQRVHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEA 204 Query: 130 TSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKVICDRVAVMEAGEVIEQGEVLD 189 TSALDPETT+SIL+LLR IN++LG+TI+LITH+M VI+ I DRV V+E G V E GEV Sbjct: 205 TSALDPETTQSILQLLRDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQ 264 Query: 190 VFREPKHEVTRALIGDVIAHELPKGVLERLRARGXCPRAYWSACARLANTEAGSGTDHLF 249 VF +P+H TRAL+ + H LP+ + + L+ + R + + Sbjct: 265 VFGKPQHAATRALLAP-LQHGLPQELQQALQPQAPAGR-----------------HERVL 306 Query: 250 RFAFTGSGVDQPHLSEAVRRFDLDFNILHGQIDEIQGQAFGSLAI 294 + F G QP L +L +D IQG G L + Sbjct: 307 QLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVL 351 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 148 bits (374), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 3/199 (1%) Query: 10 VRTINLLNRPTEGKIILDGKDMTTLSADDLRDARRHIGMIFQHFNLLSSRTVYDNIAL-P 68 +R IN L G I++DG+ + D+ R +GM+FQ FNL RTV +N+ P Sbjct: 44 LRCINGLESYERGDILIDGQRVDR-DGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGP 102 Query: 69 LELAGLSKAEIAKKVEPLLELVGLTALKDRYPAQISGGQKQRVGIARALANDPKVLLSDE 128 + + GL++A+ + LL+ VGL A D YPAQ+SGGQ+QRV IAR+LA P+ +L DE Sbjct: 103 IYVNGLARAQARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDE 162 Query: 129 ATSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKVICDRVAVMEAGEVIEQGEVL 188 TSALDPE +L ++R + + G+T++++TH+M + + DRV + +G ++E G Sbjct: 163 PTSALDPELVGEVLAVMRTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAA 221 Query: 189 DVFREPKHEVTRALIGDVI 207 V EP+H T+ + VI Sbjct: 222 QVLAEPQHARTQDFLRRVI 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/196 (41%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 10 VRTINLLNRPTEGKIILDGKDMTTLSADDLRDARRHIGMIFQHFNLLSSRTVYDNIAL-P 68 +R IN L EG I + G + S +LR+ R +GMIFQ FNL +V N+ + P Sbjct: 46 LRCINGLESIDEGNISVAGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAP 104 Query: 69 LELAGLSKAEIAKKVEPLLELVGLTALKDRYPAQISGGQKQRVGIARALANDPKVLLSDE 128 + + G+S+AE K + LE VGL D YP Q+SGGQ+QRV IARAL+ P+ LL DE Sbjct: 105 MIVKGVSEAEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDE 164 Query: 129 ATSALDPETTRSILELLRKINKELGLTIVLITHQMEVIKVICDRVAVMEAGEVIEQGEVL 188 TSALDPE +L ++R + KE G+T++++TH+M + +C+R+ M G+V E G Sbjct: 165 ITSALDPELVNEVLTVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPE 223 Query: 189 DVFREPKHEVTRALIG 204 ++F PK + IG Sbjct: 224 ELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,688 Number of extensions: 40366 Number of successful extensions: 394 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 130 Length of query: 324 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 239 Effective length of database: 1,217,395 Effective search space: 290957405 Effective search space used: 290957405 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)