BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0005.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme... 364 e-102 gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme... 191 4e-50 gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme... 162 3e-41 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 55 3e-09 >gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/217 (92%), Positives = 213/217 (98%) Query: 1 MSSELIDLFVSSFGETLMMVGISGLLGAVFGVPLGIALHLTERKGILPNVAFNRVAGLLV 60 MSSELIDLFVSSFGETLMMV ISG++G++ G+PLGIALH+TE KG+LPNVAFNR+AGLLV Sbjct: 1 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLV 60 Query: 61 NAVRSTPFIILLVAVIPFTRFFVGTSIGTAAAIVPLTIASAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIP TRFFVGTSIGTAAAIVPLTIA+APFIARLVETALREVDHGLV Sbjct: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQTLGDVLVRRLSHR 217 YQRFLPEVMLAVVLILIVFVQLVQ+LGD+LVR+LSHR Sbjct: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 199 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/199 (57%), Positives = 141/199 (70%) Query: 19 MVGISGLLGAVFGVPLGIALHLTERKGILPNVAFNRVAGLLVNAVRSTPFIILLVAVIPF 78 MV +SG L V GVPL + L ++ G L +RV G ++N R+TPFI+LLVA+IP Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 79 TRFFVGTSIGTAAAIVPLTIASAPFIARLVETALREVDHGLVEAAQAMGATTWQIIYKVL 138 TR GT+IG AAIVPL I++ PF AR+VE +LREVD GLVEAAQA+G W I++ V Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 139 VPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQRFLPEVMLAVVLILIV 198 +PEA GIV G TIT V+L+ SAMAGA+G GGLGDL IRYGYQRF +VM+ V+ +LIV Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180 Query: 199 FVQLVQTLGDVLVRRLSHR 217 V LVQ GD VRRL +R Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199 >gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 229 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 114/219 (52%), Positives = 146/219 (66%), Gaps = 7/219 (3%) Query: 6 IDLFVSSFGE-------TLMMVGISGLLGAVFGVPLGIALHLTERKGILPNVAFNRVAGL 58 IDL V +GE TL M G S + G+PLGI L LT R+ +L V L Sbjct: 11 IDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLEQRGLYLVLSL 70 Query: 59 LVNAVRSTPFIILLVAVIPFTRFFVGTSIGTAAAIVPLTIASAPFIARLVETALREVDHG 118 +VN +RS PF+ILL+ +IPFT + VGTS+G AI PL I +APF ARL E+ LRE+D G Sbjct: 71 VVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRG 130 Query: 119 LVEAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIR 178 ++EA AMGA QII+ L+PEA G++A +TIT ++L+ Y+AM+G IGGGGLGDL IR Sbjct: 131 ILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIR 190 Query: 179 YGYQRFLPEVMLAVVLILIVFVQLVQTLGDVLVRRLSHR 217 YGYQRF EVM+ V IL+V VQL+Q GD LV R + + Sbjct: 191 YGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 17/187 (9%) Query: 26 LGAVFGVPLGIALHLTERKGILPNVAFNRVAGLLVNAVRSTPFIILLVAVIPFTRFFVGT 85 L + GV +GI + + P+ R + VR+TPF++ + F +F Sbjct: 30 LAVIVGVAIGIFVAFAKNS---PHRWLARGCSAYIEVVRNTPFLVQI-----FLLYFGLA 81 Query: 86 SIGT-----AAAIVPLTIASAPFIARLVETALREVDHGLVEAAQAMGATTWQIIYKVLVP 140 S+G AAA++ + I A + A ++ L V G +EAAQ +G + W+I + V++ Sbjct: 82 SLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIEAAQCLGLSVWRIRWHVMLQ 141 Query: 141 EAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLG--IRYGYQRFLPE--VMLAVVLIL 196 A + LT F+ ++ SAMA I L + ++ R L V+ A+ L+L Sbjct: 142 PAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTFRSLETYLVVAALYLVL 201 Query: 197 IVFVQLV 203 + V+LV Sbjct: 202 AILVKLV 208 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.144 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 543,831 Number of extensions: 21297 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 11 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)