BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0002.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310324|ref|YP_003774416.1| GTP-binding protein [Herbaspiri...   400   e-113

>gi|300310324|ref|YP_003774416.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  400 bits (1029), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/227 (85%), Positives = 207/227 (91%)

Query: 7   KKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILNKSDLADPSVTQAWIAHYNSQK 66
           +KVD+VIEVVDARLPQASCNPMIEQ+R  RQRPCLKILNK+D+ADP  TQAWI +YNSQK
Sbjct: 22  EKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILNKTDMADPVATQAWIDYYNSQK 81

Query: 67  NVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMMIMGIPNVGKSTLMNALLKKRV 126
            V AVALSCKKPSDVA+VPKLA+ +APHRGT LKPLRMMIMGIPNVGKSTLMNALLKKRV
Sbjct: 82  GVMAVALSCKKPSDVARVPKLAMQVAPHRGTALKPLRMMIMGIPNVGKSTLMNALLKKRV 141

Query: 127 AAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPSDGLMLAASHAIGSNALIEEEV 186
           AAVGDEPAVTKTQQRLYLGNNMVL DTPGMLWPKI+HPSDGLMLAASHA+GSNALIEEEV
Sbjct: 142 AAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPSDGLMLAASHAVGSNALIEEEV 201

Query: 187 ATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVATKRENASKKG 233
           ATFLAD LL+RYP LL ARYGF TEGMDGVAVVEGVA KR    K G
Sbjct: 202 ATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAKRGFRLKGG 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 666,356
Number of extensions: 24261
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)