BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0255.0001.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310323|ref|YP_003774415.1| methylenomycin A resistance pro...   118   2e-28

>gi|300310323|ref|YP_003774415.1| methylenomycin A resistance
           protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score =  118 bits (296), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 72/91 (79%), Gaps = 1/91 (1%)

Query: 1   VGPLVGGILIHSFGWRSVFLINVPVGLLGLFMAVKMIPAVERHMRALTITSHFLGVLMLA 60
           VGPLVGG+LIH  GWRSVFLINVPVGL+GL MA K+IP V  H RAL ++SH  GV+MLA
Sbjct: 170 VGPLVGGVLIHWLGWRSVFLINVPVGLVGLVMARKLIPQVGGHARALNLSSHLAGVVMLA 229

Query: 61  ALSFVLIQGPVYGWTSLPIVTAVIVVVLALG 91
            LSFVLIQGPVYGWTS P + A + V L+ G
Sbjct: 230 GLSFVLIQGPVYGWTS-PRILAGLAVALSAG 259



 Score = 58.2 bits (139), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 25/150 (16%)

Query: 2   GPLVGGILIHSFGWRSVFLINVPVGLLGLFMAVKMIPAVERHMRALTITSHFLGVLMLAA 61
           G L+ G +   +G R   L+ + VG +   +A+   PA    + AL   S  LG+     
Sbjct: 334 GNLMSGRMSAHWGPRVPLLLGLSVGTVFTALAMGFSPATPYWLLALVCASANLGIS---- 389

Query: 62  LSFVLIQGPVYGWTSLPIVTAVIVVV--------LALGMLVQRXIGALVGVALMGAILHS 113
                        T++P +T V++ V         A  +   R IGALVGVALMGAILHS
Sbjct: 390 -------------TAIPAMTTVVMQVAGKAHANSAAAALNANRQIGALVGVALMGAILHS 436

Query: 114 FGGWITRIVLAYGVVAIVYALALVLVLRYV 143
             GW  R  LA+GV+A  YA AL LV R+V
Sbjct: 437 VTGWNLRNPLAFGVMAAGYASALWLVWRFV 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 356,212
Number of extensions: 11801
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 4
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)