BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0004.p
         (107 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...   159   4e-41

>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  159 bits (403), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 84/104 (80%)

Query: 3   LLQAAGFAVSRLDDVPGMAVMRTVAMLANEAADTVNQGVCSAADADMAMQKGVNYPRGPL 62
           +LQA G  +S + DVPGM VMRTV ML NEAAD VNQGVC+AADADMAM+KGVNYPRGPL
Sbjct: 408 VLQACGLDLSPMQDVPGMMVMRTVCMLVNEAADAVNQGVCNAADADMAMRKGVNYPRGPL 467

Query: 63  AWADAIGLDTVAGVLSHLAAAYGEDRYRVSPLIMRKTASKGKFH 106
           AWA+ IG+DTV  VL HL A YGEDRYR+SPL+ R  AS  KFH
Sbjct: 468 AWANEIGIDTVNQVLHHLCATYGEDRYRISPLLQRLYASGRKFH 511


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 320,289
Number of extensions: 11428
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 35
Effective length of database: 1,278,950
Effective search space: 44763250
Effective search space used: 44763250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)