BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0253.0003.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 164 1e-41 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 149 3e-37 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 141 7e-35 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 139 2e-34 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 135 4e-33 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/186 (47%), Positives = 112/186 (60%), Gaps = 1/186 (0%) Query: 78 DRLSGIAVFVQAVEAGSFARTAERMHLSRSAVAKSIARLEERLGVRLFHRTTRSQSLTDE 137 DR + VF V+A SF R A+ ++L R+ V + LE L VRL +RTTR SLT + Sbjct: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPD 61 Query: 138 GQAYYDRCLRALDELESGEAAVNTGRSVPSGRVRLSMPVLFGRRCVAPVLVRLAQRYPAL 197 G AYY+RC+R L +L+ E + P GR+R+ +P GR + P L RYP + Sbjct: 62 GAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDI 121 Query: 198 ELTASFTDRVVDLVDEGVDLVIRSGPLLDSSGIVARRLGEQETCLCAAPAYLARHGMPQT 257 EL DR VDLV E VD VIR G L DSS +VARR+G +T CAAPAYL RHG+P T Sbjct: 122 ELMMGMGDRPVDLVQEAVDCVIRIGELQDSS-MVARRIGTFQTVTCAAPAYLERHGVPHT 180 Query: 258 IADLAQ 263 I DL Q Sbjct: 181 IEDLQQ 186 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 117/185 (63%), Gaps = 1/185 (0%) Query: 79 RLSGIAVFVQAVEAGSFARTAERMHLSRSAVAKSIARLEERLGVRLFHRTTRSQSLTDEG 138 +L I +F +A E GSF AE + L+ ++V++SI+RLE RLGVRLF RTTR LT EG Sbjct: 8 QLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREG 67 Query: 139 QAYYDRCLRALDELESGEAAVNTGRSVPSGRVRLSMPVLFGRRCVAPVLVRLAQRYPALE 198 + Y D+C +AL+++ E + + VPSG +R+S+ + + P+L R Q YP +E Sbjct: 68 ELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIE 127 Query: 199 LTASFTDRVVDLVDEGVDLVIRSGPLLDSSGIVARRLGEQETCLCAAPAYLARHGMPQTI 258 + S +RVVD V+EG DL IR G DS ++A L E L AAPAYLAR G P++I Sbjct: 128 VELSIANRVVDFVEEGYDLAIRLGVPPDSR-LIAHTLEEATLGLFAAPAYLARRGQPRSI 186 Query: 259 ADLAQ 263 A+L Q Sbjct: 187 AELEQ 191 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 141 bits (355), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 109/184 (59%), Gaps = 1/184 (0%) Query: 78 DRLSGIAVFVQAVEAGSFARTAERMHLSRSAVAKSIARLEERLGVRLFHRTTRSQSLTDE 137 D+L + FV VE+GSF + S+ AV++ ++ LE+ LG+RL HRTTR SLTDE Sbjct: 2 DKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDE 61 Query: 138 GQAYYDRCLRALDELESGEAAVNTGRSVPSGRVRLSMPVLFGRRCVAPVLVRLAQRYPAL 197 G+ Y+ RC L+ ++ E+ V GR+R+ P FG +AP+ + +++P + Sbjct: 62 GRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLI 121 Query: 198 ELTASFTDRVVDLVDEGVDLVIRSGPLLDSSGIVARRLGEQETCLCAAPAYLARHGMPQT 257 L + +DR +DL++EG D+ IR L DS +VAR L CAAP +LARHG P T Sbjct: 122 TLNITLSDRTIDLLEEGFDMAIRISALGDSR-MVARPLAPVRMIACAAPEFLARHGTPGT 180 Query: 258 IADL 261 A+L Sbjct: 181 PAEL 184 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/186 (38%), Positives = 115/186 (61%), Gaps = 1/186 (0%) Query: 78 DRLSGIAVFVQAVEAGSFARTAERMHLSRSAVAKSIARLEERLGVRLFHRTTRSQSLTDE 137 ++L I F+ + GSF + AE + +S++AV++++ LE RLG RL RTTR SLT+ Sbjct: 2 NKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEA 61 Query: 138 GQAYYDRCLRALDELESGEAAVNTGRSVPSGRVRLSMPVLFGRRCVAPVLVRLAQRYPAL 197 G Y +RC + + LE + +++G + P+G +R++ P+ FG +AP+ +R+P + Sbjct: 62 GALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEI 121 Query: 198 ELTASFTDRVVDLVDEGVDLVIRSGPLLDSSGIVARRLGEQETCLCAAPAYLARHGMPQT 257 L + +DR+VD++DEG D+ IR L DS+ +V R+L +CA+PAYL HG P Sbjct: 122 SLDITLSDRIVDIIDEGYDMAIRIARLSDST-LVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 258 IADLAQ 263 +LAQ Sbjct: 181 PHELAQ 186 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 1/185 (0%) Query: 79 RLSGIAVFVQAVEAGSFARTAERMHLSRSAVAKSIARLEERLGVRLFHRTTRSQSLTDEG 138 +L + +F + E SF+ A ++ L ++V+ +I +LE+ LG RL RTTR LT +G Sbjct: 3 QLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADG 62 Query: 139 QAYYDRCLRALDELESGEAAVNTGRSVPSGRVRLSMPVLFGRRCVAPVLVRLAQRYPALE 198 +A+Y R LDE ES + G SGR+R+ M R V P L ++P LE Sbjct: 63 EAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLE 122 Query: 199 LTASFTDRVVDLVDEGVDLVIRSGPLLDSSGIVARRLGEQETCLCAAPAYLARHGMPQTI 258 + S +DR VDLV EG D V+R+G L DSS +VAR +G CA+P YL R+G PQT+ Sbjct: 123 IELSASDRRVDLVAEGFDCVLRTGTLDDSS-LVARPIGHLVQINCASPEYLRRYGTPQTL 181 Query: 259 ADLAQ 263 DLAQ Sbjct: 182 EDLAQ 186 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.137 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 802,687 Number of extensions: 29353 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 58 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)