BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0252.0007.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312397|ref|YP_003776489.1| cys regulon transcription regul...   204   1e-54
gi|300310987|ref|YP_003775079.1| cys regulon transcription regul...   118   8e-29

>gi|300312397|ref|YP_003776489.1| cys regulon transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  204 bits (519), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 101/102 (99%)

Query: 3   HDSGSFTIATTHTQARYSLPKVVQAFTQRYPKVRLSLLQGNPKQITEMVRNDQADIAIAT 62
           HDSGSFTIATTHTQARY+LPKVVQAFTQ+YPKV LSLLQGNPKQITEMVRNDQADIAIAT
Sbjct: 90  HDSGSFTIATTHTQARYALPKVVQAFTQKYPKVHLSLLQGNPKQITEMVRNDQADIAIAT 149

Query: 63  EALASGEGLVSLPCYQWEHVVVVPPDHPLLKSRNLSLEEIAA 104
           EALASGEGLVSLPCYQWEHVVVVPPDHPLL+S++L+LEEIAA
Sbjct: 150 EALASGEGLVSLPCYQWEHVVVVPPDHPLLQSKSLTLEEIAA 191


>gi|300310987|ref|YP_003775079.1| cys regulon transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  118 bits (296), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 71/99 (71%)

Query: 5   SGSFTIATTHTQARYSLPKVVQAFTQRYPKVRLSLLQGNPKQITEMVRNDQADIAIATEA 64
           SG+ +IATTHTQARY LP+VVQAF   +P+VR++L Q  P+ I E V + +ADI IATE 
Sbjct: 92  SGTLSIATTHTQARYVLPRVVQAFRDAFPQVRIALQQSAPEHIAEWVISGKADIGIATEG 151

Query: 65  LASGEGLVSLPCYQWEHVVVVPPDHPLLKSRNLSLEEIA 103
           L+  + LVS PCY W HV+VVP  HPLL    +SLE++ 
Sbjct: 152 LSQFKELVSFPCYTWSHVIVVPKGHPLLGLEQVSLEDLG 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 284,832
Number of extensions: 9137
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)