BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0252.0004.p
         (605 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312399|ref|YP_003776491.1| sulfite reductase subunit beta ...  1020   0.0  
gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein [...    98   2e-21

>gi|300312399|ref|YP_003776491.1| sulfite reductase subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 565

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/606 (81%), Positives = 529/606 (87%), Gaps = 42/606 (6%)

Query: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELVEDEFRILRLQNGLYLQRHAYMLRIAVPY 60
           MYRYDQYDHLIVKERVAQYRDQVRRRLSDEL EDEFRILRLQNGLYLQRHAYMLRIA+PY
Sbjct: 1   MYRYDQYDHLIVKERVAQYRDQVRRRLSDELAEDEFRILRLQNGLYLQRHAYMLRIAIPY 60

Query: 61  GLLASRQVRMFAHIARKYDRGYGHFTTRQNIQFNWIKLEESPDILAELATVEMHAIQTSG 120
           G+LAS Q+R FA IA KYDRGYGHFTTRQNIQFNWIKLEESP+IL +LA+VEMHAIQTSG
Sbjct: 61  GMLASNQLRKFAEIAVKYDRGYGHFTTRQNIQFNWIKLEESPEILEQLASVEMHAIQTSG 120

Query: 121 NCIRNTCTPSRLPATASAQQYSGRLEAVDRVEIRPLVSGTLTAVHFKDGAMVKKGDVLFT 180
           NCIRNT               S  L  V   EI                           
Sbjct: 121 NCIRNTT--------------SDELAGVAADEI--------------------------- 139

Query: 181 IDPRPYAELIREWSTFHPEFAYLPRKFKIAISGSEQDRAATAVHDIGLHVIKNEAGEVGF 240
           +DPRPYAELIREWSTFHPEFAYLPRKFKIAISG+ +DRAATAVHDIGLHV+KNEAGEVGF
Sbjct: 140 VDPRPYAELIREWSTFHPEFAYLPRKFKIAISGAAEDRAATAVHDIGLHVLKNEAGEVGF 199

Query: 241 RVLVGGGMGRTPILGSQIRDFLPWKHAMSYLEAILRVYNQYGRRDNIYKARIKILVKAIG 300
           RVLVGGGMGRTPILGS IRDFLPW+HAMSYLEAILRVYNQYGRRDN+YKARIKILVKAIG
Sbjct: 200 RVLVGGGMGRTPILGSVIRDFLPWQHAMSYLEAILRVYNQYGRRDNMYKARIKILVKAIG 259

Query: 301 PEEFARQVEAEWQDIKDGPSTLTEEELQRVANYFTEPAYETLPATDAEYERLKAEDKGFA 360
           PEEFARQVE EW  IKDGPSTLTEEELQRVA +FT+PAYETLPA DAEYERLKAED+GFA
Sbjct: 260 PEEFARQVEEEWAQIKDGPSTLTEEELQRVAKFFTDPAYETLPAVDAEYERLKAEDRGFA 319

Query: 361 NWIKRNVKEHKVPGYAAAILSLKKTGVPPGDITADQLDFVADLADRYSFSELRVTHEQNL 420
           NWIKRNVK HK  GYAA +LSLKK GVPPGDITADQ++FVADLAD+YSF ELRVTHEQNL
Sbjct: 320 NWIKRNVKAHKKAGYAAVVLSLKKPGVPPGDITADQMNFVADLADQYSFGELRVTHEQNL 379

Query: 421 VLADVKKSELYALWKEAKAHGLATPNIGLLTDIICCPGGDFCSLANAKSIPIAQAIAERF 480
           VLADVK+SELYALW+ AK+HGLATPNIGLLTDIICCPGGDFCSLANAKSIPIAQAIAE+F
Sbjct: 380 VLADVKQSELYALWQAAKSHGLATPNIGLLTDIICCPGGDFCSLANAKSIPIAQAIAEKF 439

Query: 481 DNIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGAEWYQVSLGGAQGNTSSIGK 540
           +NIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDG+EWYQVSLGGAQGN SS+GK
Sbjct: 440 ENIDFQHDIGDIELNISGCINACGHHHVGNIGILGVDKDGSEWYQVSLGGAQGNESSVGK 499

Query: 541 IIGPSFSAHQMPTVIDRLLQVYVKQRIEDERFIDTVRRVGVTPFKDFVYATPIKAGQ-VT 599
           IIGPSFSA QMPTVIDRLLQVYV+QR E+ERFIDTVRR+GVTPFK+FVYATPI++ + V 
Sbjct: 500 IIGPSFSATQMPTVIDRLLQVYVQQRTEEERFIDTVRRIGVTPFKEFVYATPIRSAEYVA 559

Query: 600 GEDVCA 605
           GED  A
Sbjct: 560 GEDANA 565


>gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%), Gaps = 1/54 (1%)

Query: 139 QQYSGRLEAVDRVEIRPLVSGTLTAVHFKDGAMVKKGDVLFTIDPRPY-AELIR 191
           Q YSGR+EAVDRVE+RPLV GTLTAVHFKDGA+VKKGDVLFTIDPRPY AE+ R
Sbjct: 65  QSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPRPYEAEVAR 118


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,969,684
Number of extensions: 84581
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 3
Length of query: 605
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,188,985
Effective search space: 611138290
Effective search space used: 611138290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)