BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0012.p
         (75 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311164|ref|YP_003775256.1| major facilitator superfamily p...    76   5e-16
gi|300313516|ref|YP_003777608.1| major facilitator superfamily p...    64   2e-12
gi|300311567|ref|YP_003775659.1| major facilitator superfamily p...    63   4e-12
gi|300313342|ref|YP_003777434.1| major facilitator superfamily p...    62   8e-12
gi|300309876|ref|YP_003773968.1| major facilitator superfamily p...    59   7e-11

>gi|300311164|ref|YP_003775256.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score = 76.3 bits (186), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 43/50 (86%)

Query: 18 DITFRRVIWRIVPFVTLIWFLAWVDRVNVGFAKLTMMSDLQWSDAVYGAG 67
          ++T+R++ WR++PF+  ++ LAW+DRVNVGFAKL M+ DLQ+S+AVYG G
Sbjct: 22 EVTYRKIAWRLIPFLVFLFVLAWIDRVNVGFAKLQMLQDLQFSEAVYGLG 71


>gi|300313516|ref|YP_003777608.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score = 64.3 bits (155), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 15 EERDITFRRVIWRIVPFVTLIWFLAWVDRVNVGFAKLTMMSDLQWSDAVYGAG 67
          + +D  +++V WRI+PF+ L + +A++DRVNVGFAKL M  DL +S+ V+G G
Sbjct: 16 KSKDGLYKKVFWRIMPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSETVFGLG 68


>gi|300311567|ref|YP_003775659.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 435

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query: 17 RDITFRRVIWRIVPFVTLIWFLAWVDRVNVGFAKLTMMSDLQWSDAVYGAG 67
           D T+ +V WR++P + L +  +++DRVNVGFAKL M+ DL++SD VYG G
Sbjct: 17 EDATYSKVTWRLLPLLFLCYVASYLDRVNVGFAKLQMLQDLKFSDTVYGLG 67


>gi|300313342|ref|YP_003777434.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score = 62.0 bits (149), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 44/61 (72%)

Query: 7  AAPAHTAVEERDITFRRVIWRIVPFVTLIWFLAWVDRVNVGFAKLTMMSDLQWSDAVYGA 66
          A  +  +  + D  +++V W+I+P++ L + +A++DRVNVGFAKL+M+SDL  S+A YG 
Sbjct: 2  ANASQGSAVQFDGLYKKVTWKILPWLLLGYVIAYLDRVNVGFAKLSMLSDLGMSEAAYGL 61

Query: 67 G 67
          G
Sbjct: 62 G 62


>gi|300309876|ref|YP_003773968.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score = 58.9 bits (141), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query: 13 AVEERDITFRRVIWRIVPFVTLIWFLAWVDRVNVGFAKLTMMSDLQWSDAVYGAG 67
          A +  D  +R+V  RI+PF+ + + ++++DR+N+GFA+L M  DL +SDA+YG G
Sbjct: 17 ASQAEDAIYRKVWLRIIPFLFICYVVSFLDRINIGFAQLQMKQDLGFSDAMYGLG 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 219,312
Number of extensions: 6608
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 1,619,870
Length adjustment: 46
Effective length of query: 29
Effective length of database: 1,402,060
Effective search space: 40659740
Effective search space used: 40659740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)