BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0006.p (246 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC trans... 97 2e-21 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 79 5e-16 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 75 6e-15 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 68 6e-13 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 65 4e-12 >gi|300314011|ref|YP_003778103.1| phosphate/phosphonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 4/117 (3%) Query: 109 GKSTLLRCINGLATPTSGELVAAG----FDATDARNGNIRKLRQQVAMIFQHHNVVPRLS 164 GKSTL+RCIN L P+ G + G + + R +R+ R+ + M+FQ +N+V RLS Sbjct: 43 GKSTLIRCINRLVDPSRGAIWFEGEGKRVNLAELRGRALREQRRHIGMVFQEYNLVERLS 102 Query: 165 VLKNVLTGRLGQTATLSSVLQLFSRQDVALAMDCLRRVELEHKAGQRTDALSGGQRQ 221 V++N+L GRLG ++ + F+++D+A A + L V L + A QR DALSGGQRQ Sbjct: 103 VMENLLCGRLGYVNAFTAWRRNFAKEDIAHAFELLDTVGLGNFANQRADALSGGQRQ 159 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%) Query: 108 AGKSTLLRCINGLATPTSGELVAAGFDATDARNGNIRKLRQQVAMIFQHHNVVPRLSVLK 167 +GKSTLLRC+NGL +G++ G D N+R+LR+QV ++FQ +N+ P L+V + Sbjct: 41 SGKSTLLRCLNGLEKVDAGDIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVER 100 Query: 168 NVLTGRLGQTATLSSVLQLFSRQDVALAMDCLRRVELEHKAGQRTDALSGGQRQ 221 N+ T L+++ ++ + Q +A L+ V LE+K + LSGGQ Q Sbjct: 101 NI-------TLALTTIKKMSTEQAKTIAHKVLQLVGLENKKDAYPEQLSGGQAQ 147 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 12/116 (10%) Query: 108 AGKSTLLRCINGLATPTSGELVAAGFDATDARNGNIRKLRQQVAMIFQHHNVVPRLSVLK 167 +GKST+LRCINGL T G + AG T ++ ++ +LR+ V M+FQH+N+ P L+V + Sbjct: 40 SGKSTMLRCINGLETIDGGSITVAGHKLTH-KHEHLIELRKDVGMVFQHYNLFPHLTVEE 98 Query: 168 NV-LTGRL-GQTATLSSVLQLFSRQDVALAMDCLRRVELEHKAGQRTDALSGGQRQ 221 N+ L+ R+ +TAT + +R+ A+ L++V L+HK + LSGGQ+Q Sbjct: 99 NIMLSPRIVKKTATET------ARET---AIKVLKQVGLDHKRDAYPEQLSGGQQQ 145 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 8/114 (7%) Query: 108 AGKSTLLRCINGLATPTSGELVAAGFDATDARNGNIRKLRQQVAMIFQHHNVVPRLSVLK 167 +GKST LRCIN L +G++ G A A ++R LR+ V ++FQ +N+ P L+VL+ Sbjct: 41 SGKSTALRCINRLEQIDAGQISVCG-HALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQ 99 Query: 168 NVLTGRLGQTATLSSVLQLFSRQDVALAMDCLRRVELEHKAGQRTDALSGGQRQ 221 N+ LG TA V ++ + Q LA L RV L KAG + LSGGQ+Q Sbjct: 100 NI---TLGPTA----VKRMPADQAQTLAQQVLARVGLADKAGAYPEQLSGGQQQ 146 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%) Query: 108 AGKSTLLRCINGLATPTSGELVAAGFDATDARNGNIRKLRQQVAMIFQHHNVVPRLSVLK 167 +GKST LRC+NGL + G++ G D + N+ LR ++ M+FQ N+ P ++VL+ Sbjct: 38 SGKSTFLRCLNGLEEVSDGDIFIEGVKLNDPKV-NLNALRAELGMVFQRFNLFPHMTVLE 96 Query: 168 NVLTGRLGQTATLSSVLQLFSRQDVALAMDCLRRVELEHKAGQRTDALSGGQRQ 221 N++ + V +L R+ V +A L++V L K + LSGGQ+Q Sbjct: 97 NLIMAPM-------QVKKLSRREAVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQ 143 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 627,858 Number of extensions: 24324 Number of successful extensions: 289 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 16 Length of query: 246 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 163 Effective length of database: 1,226,865 Effective search space: 199978995 Effective search space used: 199978995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)