BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0005.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC trans...   101   5e-23
gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC trans...    99   2e-22

>gi|300314009|ref|YP_003778101.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  101 bits (251), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 82/132 (62%), Gaps = 1/132 (0%)

Query: 37  ASSRTSDFLSRSFPPNWKILGNLVGPA-VETVQIAIWGTLLGVIGAIPVSFLAARNLNRN 95
           A  + SD L+R +P +W   G+ V    +ET+ IA  GTLL ++ AIP   L A NL R+
Sbjct: 59  APEQMSDMLARMWPIDWAYFGSDVQAGLIETLHIATLGTLLSIVLAIPFGLLVAPNLTRH 118

Query: 96  RVVYQSVRQLLNVTRSINELILALVFVSAVGLGPFPGVLALALHGVGMVGKFFAESIEEI 155
           R +    R +L  +RS+N L+ AL+F++  G GP  G LA+A   +G VGK   E+IE++
Sbjct: 119 RGLNLFARIVLVASRSVNSLVWALLFLAIFGPGPLAGTLAIAFRSIGFVGKMAGETIEQM 178

Query: 156 DDGPLEALRATG 167
             GP+EAL+A+G
Sbjct: 179 PRGPIEALQASG 190


>gi|300314010|ref|YP_003778102.1| phosphate/phosphonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 99.0 bits (245), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 83/126 (65%), Gaps = 1/126 (0%)

Query: 42  SDFLSRSFPPNWKILGNLVGPAVETVQIAIWGTLLGVIGAIPVSFLAARNLNRNRVVYQS 101
           + FL R FPP+      L G   ET+QIA+  +L G++ ++P+  + ARNL  + + + +
Sbjct: 55  AKFLGRMFPPDLSKGDILWGGIKETLQIAVLASLFGILFSLPIGLMGARNLMPSWISWPA 114

Query: 102 VRQLLNVTRSINELILALVFVSAVGLGPFPGVLALALHGVGMVGKFFAESIEEIDDGPLE 161
            R L++V RS++ +I+A++FV AVG G   GVLAL +  +G +GK FAE+IEEI    +E
Sbjct: 115 -RALVSVCRSLHPVIVAILFVKAVGFGALAGVLALIVASIGFIGKLFAEAIEEISIKQVE 173

Query: 162 ALRATG 167
           A+RATG
Sbjct: 174 AIRATG 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,002
Number of extensions: 23248
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)