BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0047.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom...    86   8e-19
gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra...    84   3e-18
gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis tra...    68   2e-13

>gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 568

 Score = 85.9 bits (211), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 22/127 (17%)

Query: 1   VLSLLMFGALQMILRAQHEIERAGDSRYESYKLANEVRSNSEHLTQSVRSYVVTGDPRYE 60
           +++L++  AL  + R    +  A +SRY S+ LA E+R +S+ LT+  R+YVVTGDP YE
Sbjct: 25  LMTLIVLAALA-VDRYDARLNAANESRYASFLLATELRQSSDDLTRLARTYVVTGDPSYE 83

Query: 61  SIYWDIVAVSSGKKARP-------------DGRT--------VSMTDLMKQAGFTDQEFA 99
             Y  I+ + +GKKARP             DG+         V++TDLM+ AGFT  E  
Sbjct: 84  QQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVALTDLMRAAGFTAAEMG 143

Query: 100 KLNEAQS 106
           KL EA++
Sbjct: 144 KLEEAKN 150


>gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score = 83.6 bits (205), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 73/133 (54%), Gaps = 29/133 (21%)

Query: 1   VLSLL------MFGALQMILRAQHEIERAGDSRYESYKLANEVRSNSEHLTQSVRSYVVT 54
           VLS+L      + GAL+    A  E+ERA  SRY+S  LANE+R  +E +T+  R+YV T
Sbjct: 21  VLSILVAVVVSLTGALK---DANLELERAHQSRYDSTALANELRRTAEDMTKFARAYVTT 77

Query: 55  GDPRYESIYWDIVAVSSGKKARPD--------------------GRTVSMTDLMKQAGFT 94
           GDP  E  Y+ I+ + +GK+ARP                        V + +LMK+AGFT
Sbjct: 78  GDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAPGVPLGELMKRAGFT 137

Query: 95  DQEFAKLNEAQSL 107
           D+E AK+ EA  L
Sbjct: 138 DEELAKMQEALKL 150


>gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 559

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 23/112 (20%)

Query: 15  RAQHEIERAGDSRYESYKLANEVRSNSEHLTQSVRSYVVTGDPR---------------- 58
           RA+  + +A ++R+ +  LA E R   + L Q  RSYVV+G+PR                
Sbjct: 36  RARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVSGEPRLLEQHQAVLDIRDGQR 95

Query: 59  -----YESIYWDIVAVSSGKKARPDGRT-VSMTDLMKQAGFTDQEFAKLNEA 104
                Y  +YWD+V  + G+  RPD    VS+  LM+QAG++  E A+L+EA
Sbjct: 96  ARPQQYGRVYWDLVG-ADGQPPRPDSTVAVSLRKLMEQAGYSPAELARLDEA 146


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 321,038
Number of extensions: 10384
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)