BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0034.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313987|ref|YP_003778079.1| hypothetical protein Hsero_4705...   221   4e-59

>gi|300313987|ref|YP_003778079.1| hypothetical protein Hsero_4705
           [Herbaspirillum seropedicae SmR1]
          Length = 197

 Score =  221 bits (562), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/200 (58%), Positives = 141/200 (70%), Gaps = 14/200 (7%)

Query: 8   MKKRQFLAAGLLGMSATAMAANKKSIACS--AAQDAGPVLLTLTGAIGAGNRGALDPALD 65
           M+KR+FL+   LG S  A      ++A    A   AGPVLLT+TG IG  NRGALDPALD
Sbjct: 1   MQKRKFLS---LGASLLAAPVALPALAADKKAGASAGPVLLTITGDIGKANRGALDPALD 57

Query: 66  QMMAKQKLQFNRAHTFDFASLSALPQTTIKPTLEYDNRQHVLSGPLLADVAHAAGA---- 121
           QMMAKQKL F++A+TFDFA+L+ALP   I+PTLEYD R+H L GPLL++V  A GA    
Sbjct: 58  QMMAKQKLSFDKAYTFDFAALAALPSVEIQPTLEYDGRRHRLRGPLLSEVLRAVGAPAAL 117

Query: 122 ---TLADIRKYRFIVAXALADIRKYRFIVATHLDGKPIPLGGLGPLWAVYDADSFPDIME 178
               L  +  Y  +V+   ADI KYRFI+ATHLDGKPIPLGGLGPLWAVYDADSFPD+  
Sbjct: 118 ENCALRAVDGYAVLVSP--ADIAKYRFIIATHLDGKPIPLGGLGPLWAVYDADSFPDMAA 175

Query: 179 KPISARFALCPWGMYHIEAK 198
           + +  RF  CPWG+YHI  +
Sbjct: 176 RALPERFGQCPWGLYHIAVR 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 552,727
Number of extensions: 20519
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)