BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0033.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313988|ref|YP_003778080.1| Na+-dependent transporter prote...   349   8e-98

>gi|300313988|ref|YP_003778080.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  349 bits (896), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 203/217 (93%), Positives = 212/217 (97%)

Query: 1   MPPDLTAGMVLVGSVASGTASNVMIYLSRGDVALSVTISTLSALVSVFATPLLTELYVDA 60
           MPPDLTAGMVLVGSVASGTASNVMIYLSRGDVALSVTISTLSALVSVFATP+LTELYVDA
Sbjct: 88  MPPDLTAGMVLVGSVASGTASNVMIYLSRGDVALSVTISTLSALVSVFATPMLTELYVDA 147

Query: 61  SIHFDAHAMLMSIVQIVVVPIVAGLVLNLFASKLIRRIEPYLSLVSMVAILLIIAAVVGG 120
           SIHFDAHAMLMSIVQIVVVPI  GLVLNLFA KLIRRIEPYLSLVSMVAILLIIAAVV G
Sbjct: 148 SIHFDAHAMLMSIVQIVVVPIAVGLVLNLFAGKLIRRIEPYLSLVSMVAILLIIAAVVAG 207

Query: 121 SQASIASVGLVVLVGVILHNAIGLLGGYWGGRLLGFDESICRTLAIEVGMQHSGLAAALG 180
           SQASIASVGLVVLVGVILHN +GLLGGYWGGRLLGFDE++CRTLAIEVGMQ+SGLAAALG
Sbjct: 208 SQASIASVGLVVLVGVILHNGLGLLGGYWGGRLLGFDEAVCRTLAIEVGMQNSGLAAALG 267

Query: 181 KLYFTPLAALPGALFSVWHNLSGSMLAGFWRGRPPQD 217
           KLYFTP+AALPGALFSVWHNLSGS+LAG+WRGRPP+D
Sbjct: 268 KLYFTPVAALPGALFSVWHNLSGSLLAGYWRGRPPRD 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,561
Number of extensions: 19627
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)