BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0025.p (112 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 105 8e-25 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 99 1e-22 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 96 8e-22 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 87 4e-19 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 82 1e-17 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 105 bits (262), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 43/83 (51%), Positives = 67/83 (80%) Query: 1 MIALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVAD 60 MIA++L C+P +++ADEPTTALD T+Q QIL ++R+LQ+E G +++F+THD+G + +AD Sbjct: 164 MIAMSLMCNPDLIIADEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIAD 223 Query: 61 RIAVMYAGKIIEQGPAAELLTRP 83 R+AVMYAG+++E A+L +P Sbjct: 224 RVAVMYAGQVVETTDVAQLFAQP 246 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 98.6 bits (244), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 45/83 (54%), Positives = 61/83 (73%) Query: 1 MIALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVAD 60 MIA+ALSC P +L+ADEPTTALD T+Q QIL L+R LQ+E+ + ++F+THD+G AEVAD Sbjct: 173 MIAMALSCKPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVAD 232 Query: 61 RIAVMYAGKIIEQGPAAELLTRP 83 R+ VM G+ +E+ L P Sbjct: 233 RVVVMCRGEKVEENAVNPLFAAP 255 Score = 85.1 bits (209), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 58/82 (70%) Query: 2 IALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADR 61 IA AL+ +PK+++ADE +ALD ++Q QI+ L+ DLQ ELG+S +F++HD+ ++ R Sbjct: 471 IARALALNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHR 530 Query: 62 IAVMYAGKIIEQGPAAELLTRP 83 +AVMY G+I+E GP + P Sbjct: 531 VAVMYLGQIVEIGPRRAIFENP 552 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 95.5 bits (236), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 42/83 (50%), Positives = 59/83 (71%) Query: 1 MIALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVAD 60 MIA+AL+C PK+L+ADEPTTALD T+Q+QIL LL LQ+E ++++ ++HD+ AD Sbjct: 159 MIAMALACKPKLLIADEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFAD 218 Query: 61 RIAVMYAGKIIEQGPAAELLTRP 83 R+ VM GK++E AEL P Sbjct: 219 RVGVMEKGKLVESASVAELFANP 241 Score = 70.9 bits (172), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 48/68 (70%) Query: 16 DEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADRIAVMYAGKIIEQGP 75 DEPT+ALD TVQ Q+L LL +LQ+ GL+ +F+THD+ +A ++ VM GK++E G Sbjct: 443 DEPTSALDVTVQQQVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGA 502 Query: 76 AAELLTRP 83 A++L +P Sbjct: 503 TAQVLQQP 510 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 86.7 bits (213), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 57/82 (69%) Query: 2 IALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADR 61 IA AL+ P++L+ DE ALD ++Q QIL L DL+ ELGL+ +F++HD+G V+DR Sbjct: 178 IARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDR 237 Query: 62 IAVMYAGKIIEQGPAAELLTRP 83 + +MY G+++E P AEL +P Sbjct: 238 VVIMYLGRVVESAPVAELFGQP 259 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 82.0 bits (201), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 59/82 (71%) Query: 2 IALALSCSPKVLLADEPTTALDATVQIQILLLLRDLQKELGLSIVFVTHDIGAAAEVADR 61 IA+A+ P +++ADEPTTALD T+Q QIL ++ L ++ G +++++THD+ A +AD Sbjct: 166 IAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADE 225 Query: 62 IAVMYAGKIIEQGPAAELLTRP 83 +AVMYAG+I+EQG +L P Sbjct: 226 VAVMYAGRIVEQGSVDAVLDAP 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 280,247 Number of extensions: 8258 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 50 Length of query: 112 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 39 Effective length of database: 1,274,215 Effective search space: 49694385 Effective search space used: 49694385 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 124 (52.4 bits)