BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0010.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313991|ref|YP_003778083.1| major facilitator superfamily p...   349   2e-97

>gi|300313991|ref|YP_003778083.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  349 bits (895), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 230/267 (86%)

Query: 9   SSRAFSMLMLVFGLAPILAPFIGGLLLTFSTWRAIFATLTVFGGICLICTHRVMEETRDQ 68
           S++AFSMLMLVFGLAPILAPFIGGL+L F++WR IF  LT+FG +C++ T + + ET D 
Sbjct: 137 SAKAFSMLMLVFGLAPILAPFIGGLMLVFASWRGIFVVLTLFGLLCILGTRKYLTETVDV 196

Query: 69  AHVVPLHLGRVLRQYLGLLRHRQFMAYVLCGGLIQAGLFAYISGGPFVLIELHGIKPQNF 128
           +   PLHLGR LRQY GLLRHRQFM+YVLCGGL+QAG+FAYI+GGPFV+IELHG+KPQ F
Sbjct: 197 SRAEPLHLGRTLRQYWGLLRHRQFMSYVLCGGLVQAGMFAYIAGGPFVVIELHGVKPQYF 256

Query: 129 GFVFGANAIGLIACSQINARLVLKRSADRVLGKIIWIPAILTTIVAVLVACGYESLPLLL 188
           GFVF +NAIGLIA SQ+NARLV+KRSA+RVLGK++W+PA L+  V++LV  G E+LPLLL
Sbjct: 257 GFVFASNAIGLIAASQVNARLVVKRSAERVLGKVLWVPAGLSLTVSLLVLVGLETLPLLL 316

Query: 189 IGFFGFLSCHGFVGPNASAIALAQQGKQAGTAAALMGTLQFGIGMLSGVIMGVWHDGTAL 248
           +GFFGFL+ +GF GPNA+AIAL  QG+QAGTAAALMG+LQFG+G+LSGV M +WHDGTAL
Sbjct: 317 LGFFGFLTAYGFTGPNATAIALKHQGRQAGTAAALMGSLQFGMGVLSGVAMSLWHDGTAL 376

Query: 249 PLTTLMAVCGISALLLYRYVARHTMQV 275
           PL ++MAVCG++ALL+Y + A+H   V
Sbjct: 377 PLVSVMAVCGVTALLVYHFAAKHAPAV 403


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.146    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,785
Number of extensions: 30921
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)