BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0008.p
         (556 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310930|ref|YP_003775022.1| multicopper oxidase [Herbaspiri...    82   2e-16

>gi|300310930|ref|YP_003775022.1| multicopper oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 462

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 9/122 (7%)

Query: 2   VTINVTNKLREHTSIHWHGIILPFQMDGVPGISFAGIAPGETFTYKFKVQQSGTYWYHSH 61
           V I VTNKL E TS+HWHG  LP  MDGV G++   I PG+T+ Y+F  +++GT+ YH H
Sbjct: 116 VRIFVTNKLPEATSVHWHGQRLPNGMDGVSGLTQPAIPPGKTYVYEFTARRAGTFMYHPH 175

Query: 62  SG--MQEQTGMYGAIIIDPNGAGRSRGQGKNQADREHVLLLSDWMDEDPMSVLAKLKKQG 119
           +   +Q   GM G  +  P   G  R       DR+ V L++ + D  P + + K+    
Sbjct: 176 ADEMVQMAMGMMGFWVTHPKDPGFMR------VDRDFVFLMNAY-DIAPGASVPKVSTML 228

Query: 120 DF 121
           DF
Sbjct: 229 DF 230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,729,357
Number of extensions: 74957
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,193,720
Effective search space: 556273520
Effective search space used: 556273520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)