BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0001.p (147 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 91 3e-20 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 86 2e-18 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 62 2e-11 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 59 2e-10 gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 56 1e-09 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 91.3 bits (225), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%) Query: 3 RKVYNDLRNKLIKLKEGGDEAAALAGLDNELIPAMKEYSARVNAVATHQRDVINRNAAIV 62 R Y R + +K GD+A A D L+ M +Y+ V A Q+ VI++ AA + Sbjct: 120 RAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAI 179 Query: 63 DEQYRSGRTILIAVGVLALLVGIIASWRLSDGITRPLRRAVQATSAVAAGDLSMHVVVDR 122 + YRSGR++L+A+G + +++G +W L+ ITRPL +AV VAAGDL+ + Sbjct: 180 NRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSS 239 Query: 123 KDEIGQLL 130 +DE G+LL Sbjct: 240 RDETGKLL 247 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 75/128 (58%) Query: 3 RKVYNDLRNKLIKLKEGGDEAAALAGLDNELIPAMKEYSARVNAVATHQRDVINRNAAIV 62 RK Y LR ++ KL+ GD+ AA+ + +E++P K Y ++++ ++ Q+ +++++ Sbjct: 122 RKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQA 181 Query: 63 DEQYRSGRTILIAVGVLALLVGIIASWRLSDGITRPLRRAVQATSAVAAGDLSMHVVVDR 122 + Y + R I++ GVLA +W +S ITRPL RAV+ VAAGDL+ + Sbjct: 182 EAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAHS 241 Query: 123 KDEIGQLL 130 DE G+LL Sbjct: 242 NDETGRLL 249 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 61.6 bits (148), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 71/133 (53%) Query: 3 RKVYNDLRNKLIKLKEGGDEAAALAGLDNELIPAMKEYSARVNAVATHQRDVINRNAAIV 62 RK+Y R+++ K K G+ A+ LD +P Y + + QR ++ A + Sbjct: 123 RKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREI 182 Query: 63 DEQYRSGRTILIAVGVLALLVGIIASWRLSDGITRPLRRAVQATSAVAAGDLSMHVVVDR 122 D RT+++ + L LL+GI+ + L+ GIT+PL RAV + VA GDLS + V Sbjct: 183 DAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTS 242 Query: 123 KDEIGQLLXVVVD 135 +DE GQLL + D Sbjct: 243 RDETGQLLQSLKD 255 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 77/143 (53%) Query: 3 RKVYNDLRNKLIKLKEGGDEAAALAGLDNELIPAMKEYSARVNAVATHQRDVINRNAAIV 62 R YN R+KL +L + + A+ L ++IPA +Y ++ Q+ ++ ++ Sbjct: 122 RSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEG 181 Query: 63 DEQYRSGRTILIAVGVLALLVGIIASWRLSDGITRPLRRAVQATSAVAAGDLSMHVVVDR 122 + +S +++ + +A+ + +IA+W ++ ITRPL AV SAVAAGDL++ + Sbjct: 182 RDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGATS 241 Query: 123 KDEIGQLLXVVVDRKDEIGQLKS 145 KDE G LL + D + ++ S Sbjct: 242 KDETGALLAALKSMNDSLHRIVS 264 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 4/77 (5%) Query: 58 NAAIVDEQYRS----GRTILIAVGVLALLVGIIASWRLSDGITRPLRRAVQATSAVAAGD 113 NA EQ S G+++ +AVG L +++ ++ + + IT+P+R AV+ VAAGD Sbjct: 161 NAGSTGEQISSAIGAGKSLSLAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGD 220 Query: 114 LSMHVVVDRKDEIGQLL 130 L +VV RKDE G+LL Sbjct: 221 LGSRIVVTRKDETGELL 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 292,265 Number of extensions: 7690 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 12 Length of query: 147 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 70 Effective length of database: 1,255,275 Effective search space: 87869250 Effective search space used: 87869250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)