BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0032.p
         (198 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-g...   114   5e-27

>gi|300309676|ref|YP_003773768.1|
           UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score =  114 bits (285), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/71 (77%), Positives = 62/71 (87%)

Query: 18  GEMELFAQALAALREGRAYAPKVLAITGTNGKTTVTTLTGMLCRRAGLTTKVAGNISPAV 77
           GE+ELFAQAL ALRE   Y PKVLAITGTNGKTTVT LTG+LC+RAGL+ +VAGNISPA 
Sbjct: 103 GEIELFAQALVALREETLYQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAA 162

Query: 78  LDVLRQALIDD 88
           LDVLR+A+I D
Sbjct: 163 LDVLREAVIRD 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.124    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 280,128
Number of extensions: 6847
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 118
Effective length of database: 1,241,070
Effective search space: 146446260
Effective search space used: 146446260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)