BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0030.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309678|ref|YP_003773770.1| UDP-N-acetylglucosamine-N-acety...   447   e-127

>gi|300309678|ref|YP_003773770.1|
           UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  447 bits (1149), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/274 (81%), Positives = 245/274 (89%)

Query: 1   MDSIVFAGLRGKGLMHTLKGVWRMMASFGACYGIIGKRRPDVVLGMGGYVTVPGGAMARL 60
           MDSIVFAGLRGKGLMHT+KG WR++ASF  C+ I+G+RRPDVVLGMGGYVTVPGGAMARL
Sbjct: 56  MDSIVFAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGGYVTVPGGAMARL 115

Query: 61  RGVPLALVNADAALLLSNKTLAPLADKVLFGFPADFGKAAAKAEVTGNPVRKEILALPLP 120
           RG PL LVNADAALLLSNK L PLADKVLFGFPADFGKAA KAEVTGNPVR+EI ALP P
Sbjct: 116 RGKPLVLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGNPVRQEITALPPP 175

Query: 121 ATRYAGHDGPLRILVVGGSLGAKVLNECVPAALARLPADRRPLVTHQSGKQHIEALRAAY 180
             RYAG  GPL+ILVVGGSLGAKVLNE VPAALA+LP ++RP VTHQSGKQ+I ALRAAY
Sbjct: 176 VQRYAGRRGPLKILVVGGSLGAKVLNETVPAALAQLPLEQRPQVTHQSGKQNIVALRAAY 235

Query: 181 AQAGVQAEVVDFIDDMPRRYSDADLVICRAGAITVSELTAAGVASVLVPLVASTTSHQRD 240
             AGV+AEV+DFI+DMPRRY++ADLVICRAGAITVSELTAAGVASVLVPLV STTS Q +
Sbjct: 236 EAAGVEAEVLDFIEDMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLVVSTTSQQIE 295

Query: 241 NAKWMAQNKAAVHLPQTGLTPDSLAALLQKXPRA 274
           NA+WMA+NKAA+HLPQ  L+PD+LA LLQK  RA
Sbjct: 296 NARWMAKNKAAIHLPQRELSPDALAGLLQKLDRA 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 881,644
Number of extensions: 35628
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)