BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0014.p
         (829 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309688|ref|YP_003773780.1| preprotein translocase SecA sub...  1014   0.0  

>gi|300309688|ref|YP_003773780.1| preprotein translocase SecA
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 918

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/531 (90%), Positives = 510/531 (96%)

Query: 1   LLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVAAGTKLDDILPEAFAVCREASK 60
           LLKQYQKIVRQINALE  +EKL+DAELQAKTPEFKQR+A G  LD ILPEAFAVCREAS+
Sbjct: 15  LLKQYQKIVRQINALEPTVEKLTDAELQAKTPEFKQRIAGGETLDAILPEAFAVCREASR 74

Query: 61  RVLKMRHFDVQLIGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSGKGVHVVTVNDYLA 120
           RVLKMRHFDVQLIGGM LHFGKIAEMRTGEGKTLMATLPAYLNAL+GKGVHVVTVNDYLA
Sbjct: 75  RVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALAGKGVHVVTVNDYLA 134

Query: 121 QRDAEWMGKLYGWLGLTTGINLSQMEHDLKQGAYASDITYGTNNEFGFDYLRDNMVFDAG 180
           QRDAE MG+LY WLGLTTG+NLSQMEHD+KQ AYA+DITYGTNNEFGFDYLRDNMVFDA 
Sbjct: 135 QRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEFGFDYLRDNMVFDAD 194

Query: 181 DRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVPPLLTLQIGEETPD 240
           DRVQR LNFAIVDEVDSILIDEARTPLIISGQAENHT+LYHK+N VPPLLT QIGEETPD
Sbjct: 195 DRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHKMNAVPPLLTQQIGEETPD 254

Query: 241 GKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASLYDASNISLVHHLYA 300
           GKGKVEVPGDYTKDEK HQVLLTEAGH++AE+ILT MGLLPEGASLYDA+NI+L+HHLYA
Sbjct: 255 GKGKVEVPGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLPEGASLYDAANITLIHHLYA 314

Query: 301 ALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEAKEGVKIQNENQTL 360
           ALRAHTLYH+DQ YVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEAKEGVKIQNENQTL
Sbjct: 315 ALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEAKEGVKIQNENQTL 374

Query: 361 ASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPSARKDRQDQVYKTSQ 420
           ASITFQNYFRMY KLSGMTGTADTEAYEFQEIY+LETVVIPPNRP+ARKDRQDQVYKT+Q
Sbjct: 375 ASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIPPNRPNARKDRQDQVYKTAQ 434

Query: 421 EKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNVLNAKQHAREAEIIA 480
           EKYMAM+KDIQDCYERGQPVLVGTTSIENSELLSGIL ++KLPHNVLNAKQHAREAEI+A
Sbjct: 435 EKYMAMLKDIQDCYERGQPVLVGTTSIENSELLSGILTKAKLPHNVLNAKQHAREAEIVA 494

Query: 481 QAGRPKMITIATNMAGRGTDIVLGGNVEKQIQIIEADASLSDADKAAQAQK 531
           QAGRPKMITIATNMAGRGTDIVLGGNV KQIQ+IEAD SLSDADKAA+AQ+
Sbjct: 495 QAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADESLSDADKAAKAQQ 545



 Score =  462 bits (1189), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/281 (80%), Positives = 246/281 (87%)

Query: 531 KXISGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDVANDQ 590
           +  +GDRVRAIMDRLKMPEGEPIEAGIV+RSIESAQRKVEARNFDIRKQLLEYDDVANDQ
Sbjct: 605 RIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDDVANDQ 664

Query: 591 RKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALSNEWQ 650
           RKVIYQQRNELLE+AEM EMI SLR+GVFT+ FR +VP ES+EEQWDIP L+A L NEWQ
Sbjct: 665 RKVIYQQRNELLESAEMAEMIASLRDGVFTDLFREYVPAESMEEQWDIPGLQAVLKNEWQ 724

Query: 651 LDVPLTAILEAEPNLTDEELLERVLAAAASAYKTKVDVVGAEAFSGFERSVMLQSIDSHW 710
           LDV L A L+AEP++ D+ELL  +L AA  AY  KV VVG EAF+GFERSVMLQSID+HW
Sbjct: 725 LDVYLDATLKAEPDMADDELLAHLLKAAKDAYDAKVAVVGVEAFAGFERSVMLQSIDNHW 784

Query: 711 REHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRIESRE 770
           REHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIK+VMTVRI+SRE
Sbjct: 785 REHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVVMTVRIQSRE 844

Query: 771 AIEEAEENLAQSHVENVHYQHADFDANAAPEELLAPTANAA 811
            IE AEE++A     NV+YQHADFD  AAPEELLAPT  A 
Sbjct: 845 EIEAAEESMAGGSPINVNYQHADFDPEAAPEELLAPTVQAG 885


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,250,147
Number of extensions: 89496
Number of successful extensions: 309
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 2
Length of query: 829
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 736
Effective length of database: 1,179,515
Effective search space: 868123040
Effective search space used: 868123040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)