BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0011.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309691|ref|YP_003773783.1| N-acetylglutamate synthase [Her...   250   1e-67
gi|300309689|ref|YP_003773781.1| transmembrane protein [Herbaspi...   194   5e-51

>gi|300309691|ref|YP_003773783.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  250 bits (638), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/141 (85%), Positives = 131/141 (92%)

Query: 151 LAGLLGVKPEQVLPFSTGVILEPLPVERIKAGLPAAIANLKTDNWFAAAESIMTTDTQPK 210
           LA  +GV+ +Q+LPFSTGVILEPLP +RI AGLP AI NLK DNWF AAESIMTTDTQPK
Sbjct: 106 LAQQMGVEAQQILPFSTGVILEPLPADRIIAGLPQAIGNLKADNWFNAAESIMTTDTQPK 165

Query: 211 AASRTLTIGGKKVVMTGISKGAGMIKPNMATMLGYLAFDAKVPQALLNQLVKDAADQSFN 270
           AASRTLTIGGK+VVMTGISKGAGMIKPNMATMLG+LAFDAK+PQALLNQLVKDAAD SFN
Sbjct: 166 AASRTLTIGGKQVVMTGISKGAGMIKPNMATMLGFLAFDAKLPQALLNQLVKDAADHSFN 225

Query: 271 CITIDGDTSTNDSFMLIATGA 291
           CITIDGDTSTNDSF+L+ATGA
Sbjct: 226 CITIDGDTSTNDSFILMATGA 246


>gi|300309689|ref|YP_003773781.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  194 bits (494), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 108/145 (74%), Gaps = 2/145 (1%)

Query: 13  AAETEWSFFDRQQIDMRGEVLSAPRLGLLEDEGEAVQRVGMYWQSVGKSFTGADTQQAWS 72
           AA+ EW FF  QQIDMR E  SAPRLGLLEDEGEAVQRV  YW +VGK+ TGAD QQAWS
Sbjct: 81  AAKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEGEAVQRVAEYWHAVGKNLTGADCQQAWS 140

Query: 73  AAFISYLMQAAGISSDDFLPSDVHFNYLSYLKARQSLPAPLFVLRPAATEPIAPGDLICA 132
           AAFIS+LM    +   DF P++ HFNYLS+LK R+S P+P F+LRPA +EPIA GDLICA
Sbjct: 141 AAFISWLMVTTNVPPQDFAPNETHFNYLSFLKDRESRPSPQFLLRPADSEPIAAGDLICA 200

Query: 133 PRDTNQAATLDDIRPXPELAGLLGV 157
           PR  N   ++D+IRP   LAG   V
Sbjct: 201 PRGNNNITSIDEIRPG--LAGHCDV 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 981,122
Number of extensions: 42537
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)