BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0002.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   155   2e-39

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  155 bits (391), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/162 (64%), Positives = 119/162 (73%), Gaps = 6/162 (3%)

Query: 8   DARAPVLRKDS-----HRWKILGIGVLANASFSAAFAGIPVTAIFMRADYRLDNTQLGLA 62
            A APVL + S     HRWK+L  GV ANASFSA F+GIPVT++ +R+DYRL NTQLGLA
Sbjct: 2   QAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGLA 61

Query: 63  LGSLGLGVAVSELPWGVLTDRWGDRRVLLCGLISTALALAAMAACVAPDAAGVPSLWLLA 122
           LG L LGVA+ ELPWGVLTDRWGDR+VLL GL+  + AL  +     P        WL A
Sbjct: 62  LGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGAASFAWLCA 121

Query: 123 LGLLTVGLLGGSVNGSSGRAVMGWFREGERGLAMSIRQTAVP 164
             L+  GLLGGSVNG+SGRA+MGWF EGERGLAMSIRQTAVP
Sbjct: 122 G-LMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAVP 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 377,425
Number of extensions: 10133
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)