BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0015.p
         (641 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312347|ref|YP_003776439.1| hemagglutinin/hemolysin-related...    63   7e-11

>gi|300312347|ref|YP_003776439.1| hemagglutinin/hemolysin-related
            protein [Herbaspirillum seropedicae SmR1]
          Length = 3215

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 114/258 (44%), Gaps = 46/258 (17%)

Query: 2    VGATTRYASYVS---GSGTSALVFRYTVPGGDVDANGITVGA--LSLNGGTLRDTAGNNA 56
            +G   R A+YV    G     L F YTV  GD    G+ + A  L LNG ++ D +GN A
Sbjct: 1844 IGGDERTAAYVDRVPGDAPDVLKFSYTVLSGDNAPAGVAIPASPLVLNGASITDVSGNRA 1903

Query: 57   ATTLNSVGSTAGINVDGTSPSVTGISATTA-----DGSYAAGQTITITVGFSTAVDVDTS 111
              TL  V   A   +D T+P+VT ++  +A     +G+Y AG  IT  V FS  V +  +
Sbjct: 1904 VLTLGGVQPNASFKIDTTAPTVTAVAIESASVSGTEGNYRAGDVITAVVTFSEEVKLAPN 1963

Query: 112  ---------GG---XATWTDITSKVSGTTLTW-----------NGVTLAASNTLQLRVTD 148
                     GG    AT    T+  +  TL +           NG+++A ++     VTD
Sbjct: 1964 AQASLNLMVGGDSRTATLVTPTANAASNTLRFSYTLQSADADSNGISIAPNSLALAGVTD 2023

Query: 149  AAGNNGAATSRA------YVLDTTAPTTSVASVAFSADSGASGSDFITRTAAQTVSGTLS 202
             AGN  A    A      + +D  APT     ++FS  +   G+  I +     +  T S
Sbjct: 2024 KAGNAAAPAHVAVADNPLFKVDNAAPTI----LSFSTTT-PDGTYNIGKVI--NLRATAS 2076

Query: 203  SNLAAGESVLVSLDNGAT 220
              L  G  + V+LDNG T
Sbjct: 2077 EELRPGAKITVTLDNGDT 2094



 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 119/262 (45%), Gaps = 49/262 (18%)

Query: 2    VGATTRYASY--VSGSGTSALVFRYTVPGGDVDANGITVGALSLN---GGTLRDTAGNNA 56
            VGA TR ASY  +S  G +A  F Y +   D   +GI++ A +L    G  + D AGN A
Sbjct: 1716 VGANTRSASYKTLSTDGKTAY-FDYVLTAADTATDGISIPANALQLPTGARITDLAGNAA 1774

Query: 57   ATTLNSVGSTAGINVDGTSPSVT--GISATTAD---GSYAAGQTITITVGFSTAVDVDTS 111
                + V       VD ++P++T   +S  TAD   G Y AG  IT+   FS  VD++T+
Sbjct: 1775 KVDSSVVALNPAYKVDNSAPTLTEVKVSEMTADNGSGIYKAGSVITVQAKFSEPVDINTT 1834

Query: 112  GGX-------------ATWTDITS-------KVSGTTLTWN----GVTLAASNTLQLR-- 145
            GG              A + D          K S T L+ +    GV + AS  L L   
Sbjct: 1835 GGAPRIKLTIGGDERTAAYVDRVPGDAPDVLKFSYTVLSGDNAPAGVAIPAS-PLVLNGA 1893

Query: 146  -VTDAAGNN------GAATSRAYVLDTTAPTTSVASVAFSADSGASGS----DFITRTAA 194
             +TD +GN       G   + ++ +DTTAPT +  ++  ++ SG  G+    D IT    
Sbjct: 1894 SITDVSGNRAVLTLGGVQPNASFKIDTTAPTVTAVAIESASVSGTEGNYRAGDVITAVVT 1953

Query: 195  QTVSGTLSSNLAAGESVLVSLD 216
             +    L+ N  A  +++V  D
Sbjct: 1954 FSEEVKLAPNAQASLNLMVGGD 1975


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.125    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,886,691
Number of extensions: 76367
Number of successful extensions: 323
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 11
Length of query: 641
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 550
Effective length of database: 1,188,985
Effective search space: 653941750
Effective search space used: 653941750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 134 (56.2 bits)