BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0010.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 276 8e-76 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 246 1e-66 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 238 2e-64 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 238 2e-64 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 237 5e-64 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 276 bits (706), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 153/224 (68%), Positives = 171/224 (76%), Gaps = 26/224 (11%) Query: 1 MEQLTSTVKQNDDNAKQANQLARNASAIAIQGGAIVGQVVHTMDSINTSSRKIVDIIGVI 60 MEQLT+TVKQND++A+QANQLA NAS IA QGGAIV VV TM +IN SSRKIVDIIGVI Sbjct: 319 MEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVSSRKIVDIIGVI 378 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIKSLIDDSVEKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+AAAKE+K LIDDSV+ V Sbjct: 379 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEVKQLIDDSVQNV 438 Query: 121 DTGAKLVGQAGETMEQIVASVKHVTDVVGEI--------------------------ENA 154 + G LV QAG+TMEQIVASV+ VTDV+GEI NA Sbjct: 439 ENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAIALMDQVTQHNA 498 Query: 155 ALVEQASAAVGTLQDQAGRLNQAVGVFSLEDPALSSSARILPLR 198 ALVEQASAAV TLQ+QA LNQAVGVF LE P S + R + ++ Sbjct: 499 ALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQSPTLRTINVK 542 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 246 bits (627), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 141/224 (62%), Positives = 168/224 (75%), Gaps = 28/224 (12%) Query: 1 MEQLTSTVKQNDDNAKQANQLARNASAIAIQGGAIVGQVVHTMDSINTSSRKIVDIIGVI 60 ME++TSTV+QN DNA+QANQ+A +AS IA+QGG IVG+VVHTMD IN SSRKIVDIIGVI Sbjct: 308 MEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVI 367 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIKSLIDDSVEKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS+AAAKEIK+LI DSV KV Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKV 427 Query: 121 DTGAKLVGQAGETMEQIVASVKHVTDVVGEI-----ENAALVEQASAAV-----GT---- 166 + G+ LV QAG TMEQ+V+SV+ VTD+V EI E ++ +E+ + AV GT Sbjct: 428 EGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNA 487 Query: 167 ------------LQDQAGRLNQAVGVFSLEDPALSSSARILPLR 198 +Q+QA RL Q++ +F LE A S A P+R Sbjct: 488 ALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPA--APVR 529 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 238 bits (608), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/155 (78%), Positives = 140/155 (90%) Query: 1 MEQLTSTVKQNDDNAKQANQLARNASAIAIQGGAIVGQVVHTMDSINTSSRKIVDIIGVI 60 ME+LT+TVKQN DNA+QANQLA +AS +AIQGG++V QVV TM+ I SSRKI DIIGVI Sbjct: 306 MEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVI 365 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIKSLIDDSVEKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++AAKEIK+LIDDSV KV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKV 425 Query: 121 DTGAKLVGQAGETMEQIVASVKHVTDVVGEIENAA 155 DTG+KLV QAG TM ++VASV+ VTD+VGEI +A+ Sbjct: 426 DTGSKLVEQAGATMTEVVASVRRVTDIVGEISSAS 460 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 238 bits (608), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/161 (77%), Positives = 144/161 (89%), Gaps = 1/161 (0%) Query: 1 MEQLTSTVKQNDDNAKQANQLARNASAIAIQGGAIVGQVVHTMDSINTSSRKIVDIIGVI 60 ME+LTSTVKQN DNA+QANQLA +AS +A+ GG +VGQVV TM SIN SSRKIVDII VI Sbjct: 385 MEELTSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVI 444 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIKSLIDDSVEKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+ AAKEIK LIDDSV+KV Sbjct: 445 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKV 504 Query: 121 DTGAKLVGQAGETMEQIVASVKHVTDVVGEIENAALVEQAS 161 +TG++LV QAG TME++V+SV+ VTD+VGEI +AA EQ+S Sbjct: 505 ETGSQLVAQAGSTMEEVVSSVRRVTDIVGEI-SAASQEQSS 544 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 237 bits (604), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 137/239 (57%), Positives = 168/239 (70%), Gaps = 36/239 (15%) Query: 1 MEQLTSTVKQNDDNAKQANQLARNASAIAIQGGAIVGQVVHTMDSINTSSRKIVDIIGVI 60 ME+LTSTV+QN DNA+QAN LA AS +AIQGG++VG+VV TM IN +SRKIVDII VI Sbjct: 306 MEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVI 365 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIKSLIDDSVEKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+AAAKEIKSLID SVE+V Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERV 425 Query: 121 DTGAKLVGQAGETMEQIVASVKHVTDVVGEI-----ENAALVEQASAAVGTLQD------ 169 ++G++LVGQAG TME++VASVK VTDVV EI E + +EQ + A+ + + Sbjct: 426 ESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNA 485 Query: 170 ---------------QAGRLNQAVGVFSL-----EDPA-----LSSSARILPLRPFGKR 203 Q+GRL+ VG+F L P+ + S ++ P RP R Sbjct: 486 ALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPVLAR 544 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.126 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 428,222 Number of extensions: 13675 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 71 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)