BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0001.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t...    55   1e-09

>gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 394

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%)

Query: 1   MLAQNMYRLGIEASLVTAASLVGPMYLQTAGPGAEGTVSIMPGAHQRKSKQLEAFEKNYQ 60
           +LA+++ RL + A L+ +   +G  +L  AGP A G + + PG  Q K    ++F + Y 
Sbjct: 248 VLAKSIRRLKLHARLMASPGTLGLPFLMRAGPDANGALVLEPGPPQDKMPGWKSFRQRYS 307

Query: 61  QRYNAAPGAYSAVAYDQVQVLAAAIVRAGSAXRSHFARRQRQSRRLGTCG 110
           + +++    Y+  AY+  Q +   I +AGSA     A    + R  G  G
Sbjct: 308 ENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAEAMHRLRFEGVSG 357


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 338,222
Number of extensions: 11622
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)