BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0038.p (545 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase [Her... 552 e-158 gi|300309661|ref|YP_003773753.1| AraC family transcription regul... 226 3e-60 gi|300313828|ref|YP_003777920.1| aryl-alcohol dehydrogenase [Her... 147 1e-36 gi|300312028|ref|YP_003776120.1| oxidoreductase protein [Herbasp... 135 6e-33 gi|300312649|ref|YP_003776741.1| oxidoreductase protein [Herbasp... 129 9e-31 >gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/332 (80%), Positives = 288/332 (86%), Gaps = 22/332 (6%) Query: 233 MQYRRLGKSNLKVSALCLGTMMFGDQTPIDEARSIVASAREHGVNFIDTADVYSKGKSEE 292 M YRRLGKSNLKVSALCLG+MMFGDQT + E+ IVASAREHGVNFIDTADVY+KGKSEE Sbjct: 1 MHYRRLGKSNLKVSALCLGSMMFGDQTDLQESGRIVASAREHGVNFIDTADVYTKGKSEE 60 Query: 293 MVGKLLQGQRGDWVLASKLGNAMAGAPNQSHYSRHWIVAETDNILRRLDTDYLDVLYMHR 352 +VGKLL GQR +WVLASKLGNAM+G PN+S+YSR WIV ET+NIL RLDTDYLD+LYMHR Sbjct: 61 IVGKLLAGQRHEWVLASKLGNAMSGKPNESNYSRSWIVRETENILTRLDTDYLDILYMHR 120 Query: 353 DYHEENLEEAIQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNL 412 DY +ENLEEA+QALGDLIR GKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNL Sbjct: 121 DYQDENLEEAVQALGDLIRVGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNL 180 Query: 413 LNRMPEVEILPACANYGLGVVPYSPIARGVLTGKYKPGQKPPEDTRA-RARARX------ 465 LNR PEVEILPACA+YGLGVVPYSPIARGVLTGKY+PGQKP +DTRA R R Sbjct: 181 LNRQPEVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPAQDTRAGRGDKRMMETEFR 240 Query: 466 ---------------ARGVKLGQFATAWVLANSAISSVIAGPRTLAQMEDYYDAVELKIS 510 ARGVKLGQFATAWVLANSAISSVIAGPRTLAQMEDYYDA ELKIS Sbjct: 241 EESLLIAQRLQQHCEARGVKLGQFATAWVLANSAISSVIAGPRTLAQMEDYYDAAELKIS 300 Query: 511 AEEEALIDGMVTPGHSSTPGYNDPSYPFFGRV 542 AEEEAL+D +VTPGH+ST GYNDP+YPFFGRV Sbjct: 301 AEEEALVDSLVTPGHASTHGYNDPNYPFFGRV 332 >gi|300309661|ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 2/163 (1%) Query: 34 RLCAAQRELVTLIARLTEGIEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKR 93 R A Q+EL+ L+ T G+EG LET I ++RIT P GPKHAVQKPVFAVIAQG+KR Sbjct: 36 RFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKR 95 Query: 94 LFVGDDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQ 153 +FVGD+IY+YDPMHYLV+SVDLP+VGKV ++SP+ PYLGLR++LDT+EIG LIGDE+LP Sbjct: 96 IFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPA 155 Query: 154 G--VSSDASRGLFVNRLDITLMDAVLRLLRLLDTPRDIPILAP 194 VS A+RGL+VNRLD+ L+DAVLRLLRL + P D+PILAP Sbjct: 156 AAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAP 198 >gi|300313828|ref|YP_003777920.1| aryl-alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 344 Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 29/320 (9%) Query: 233 MQYRRLGKSNLKVSALCLGTMM-FGDQTPIDEARSIVASAREHGVNFIDTADVYS--KGK 289 M YRR G+S L + A+ LG FG + R+++ A + GV D A+ Y G Sbjct: 14 MPYRRTGRSGLLLPAISLGLWQNFGGVDNFETGRAVLRRAFDRGVTHFDLANNYGPPAGS 73 Query: 290 SEEMVGKLLQGQ----RGDWVLASKLGNAMAGAP-NQSHYSRHWIVAETDNILRRLDTDY 344 +EE G+ + R + V++SK G M P +R ++A + L+R+ DY Sbjct: 74 AEENFGRWMAKDFLPYRDELVISSKAGWQMWPGPYGGPSGARKHLIASCEQSLKRMGLDY 133 Query: 345 LDVLYMHRDYHEENLEEAIQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPLPL 404 +D+ Y HR + LEE + AL L R GK G+S++ + + + VPL L Sbjct: 134 VDIFYSHRVDADTPLEETMGALAHLHRQGKALYVGISSYSPELTRKAAAILKSEGVPL-L 192 Query: 405 VCQPYYNLLNRMPEVEILPACANYGLGVVPYSPIARGVLTGKY---------------KP 449 + QP Y++LNR E +LPA G+G + +SP+A+G+LT KY P Sbjct: 193 IHQPNYSMLNRAIEGGLLPALEELGVGCIGFSPLAQGLLTSKYLGGVPEGARVTRAPSLP 252 Query: 450 GQKPPEDTRARARA----RXARGVKLGQFATAWVLANSAISSVIAGPRTLAQMEDYYDAV 505 + ED AR RA RG L Q A AWVL ++ ++S + G RT+ Q++D DAV Sbjct: 253 QRMLSEDNLARIRALNEIASKRGQTLAQMAIAWVLRDARVTSALIGARTVEQLDDSLDAV 312 Query: 506 -ELKISAEEEALIDGMVTPG 524 +L + EE A ID T G Sbjct: 313 NKLDFTQEELASIDKHATDG 332 >gi|300312028|ref|YP_003776120.1| oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 165/345 (47%), Gaps = 62/345 (17%) Query: 233 MQYRRLGKSNLKVSALCLGTMMFGDQTPIDEARSIVASAREHGVNFIDTADVY------- 285 MQYR LG+++LKVS + LGTM +G+Q +A + + A E G+N ID A++Y Sbjct: 1 MQYRPLGRTDLKVSLITLGTMTWGEQNSEADAHAQLDYAVERGINLIDVAEMYPVPPKAE 60 Query: 286 SKGKSEEMVGKLLQ--GQRGDWVLASKLGNAMAGAPNQSHYSRHWIVAETDNI------- 336 ++G +E +G L+ G+R ++A+K G + H RH + +N+ Sbjct: 61 TQGLTERYLGTWLKKSGKRDQLLIATK----CTGPARKPHNPRH-VRGGINNLDRKGLTE 115 Query: 337 -----LRRLDTDYLDVLYMH-----------------RDYHEENLEEAIQALGDLIRAGK 374 L RL D++D+ +H D +EE + L + ++AGK Sbjct: 116 ALHGSLERLQLDHVDLYQLHWPDRSVNSFGQLGYQHVEDESTVPIEETLTVLSEFVKAGK 175 Query: 375 IRGFGVSNFRGWRIAEIVRLCEKNNVPLPLVCQPYYNLLNRMPEVEILPACANYGLGVVP 434 IR G+SN W +A+ +R E++ + + Q YNLLNR E+ + +G++ Sbjct: 176 IRTIGLSNETAWGVAQFLRAAEQHGLERIVTIQNPYNLLNRSFEINLAEFAHREQVGLLA 235 Query: 435 YSPIARGVLTGKYKPGQKPP-----------EDTRARARARXARGVKL--------GQFA 475 YSP+A G+L+GKY G +P T A+A A V L Q A Sbjct: 236 YSPLAFGMLSGKYLDGARPAGGRLTLFERFSRYTNAQAERATAEYVALARQHGLDPAQMA 295 Query: 476 TAWVLANSAISSVIAGPRTLAQMEDYYDAVELKISAEEEALIDGM 520 A+V + ++S I G TLAQ+ D+ EL++ + A I+ + Sbjct: 296 LAYVNSRPFLTSNIIGATTLAQLRSNIDSAELQLGEDVLAAIEAI 340 >gi|300312649|ref|YP_003776741.1| oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 129 bits (323), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 100/333 (30%), Positives = 153/333 (45%), Gaps = 46/333 (13%) Query: 236 RRLGKSNLKVSALCLGTMMFGD---QTPIDEARSIVASAREHGVNFIDTADVYSKGKSEE 292 RRLG + VSA+ LG M D Q E+ + + A E G+N +DTAD+Y +EE Sbjct: 18 RRLGSNGPLVSAIGLGCMGMSDFYAQRDDAESLATIDRALELGINLLDTADMYGPYTNEE 77 Query: 293 MVGKLLQGQRGDWVLASKLG----------NAMAGAPNQSHYSRHWIVAETDNILRRLDT 342 ++G+ ++G+R + +A+K G + G+P +I + L+RL Sbjct: 78 LLGRAIKGRRDKFFIATKFGIRRDPSDPGARGVDGSPA-------YIRQAVEGSLKRLGV 130 Query: 343 DYLDVLYMHRDYHEENLEEAIQALGDLIRAGKIRGFGVSNFRGWRIAEIVRLCEKNNVPL 402 + +D+ Y HR +E + L DL++AGKIR G+S A L + V Sbjct: 131 ETIDLYYQHRIDPATPIEVTMGVLADLVQAGKIRYIGLSE------ASAATLERAHRVHP 184 Query: 403 PLVCQPYYNLLNRMPEVEILPACANYGLGVVPYSPIARGVLTGKYKPGQKPPEDTRARAR 462 Q Y+L R PE E+L AC G+G V YSP+ RG LTG + + ED R+ Sbjct: 185 VTALQSEYSLWTRDPEAEVLAACRTLGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFRRSN 244 Query: 463 AR-----XARGVKLG---------------QFATAWVLANSAISSVIAGPRTLAQMEDYY 502 R AR ++L Q A AWV+A I G + +ED Sbjct: 245 PRFQGENFARNLQLAEKVKEMAGQHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLEDNA 304 Query: 503 DAVELKISAEEEALIDGMVTPGHSSTPGYNDPS 535 +V +K++ E+ +D + G ++ Y D S Sbjct: 305 GSVGVKLAPEDLQALDAIFPRGAAAGERYTDAS 337 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,678,230 Number of extensions: 68906 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 7 Length of query: 545 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 455 Effective length of database: 1,193,720 Effective search space: 543142600 Effective search space used: 543142600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)