BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0245.0037.p (270 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 469 e-134 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 188 3e-49 gi|300313746|ref|YP_003777838.1| LysR family transcription regul... 188 4e-49 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 141 5e-35 gi|300310408|ref|YP_003774500.1| LysR family transcription regul... 128 5e-31 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 469 bits (1208), Expect = e-134, Method: Compositional matrix adjust. Identities = 214/270 (79%), Positives = 243/270 (90%), Gaps = 2/270 (0%) Query: 1 VRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYTKYPDIELVMGMSD 60 VRILA++DETE SFRNVTRGPQGRLRIDVPAS+GRL+LLPNLCDFYT+YPDIEL+MGM D Sbjct: 70 VRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDIELMMGMGD 129 Query: 61 RPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHTIEDLQNHKS 120 RPVD+VQEAVDCVIR+G+LQDSSMVARRIGTFQ VTC +P Y ERHG+PHTIEDLQ HK+ Sbjct: 130 RPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTIEDLQQHKA 189 Query: 121 VHYFSSRTGRTIDWDFMVDGATQEVKMAGKLSVNDGDAYVACALQGFGLVQAPLYMIQPF 180 VHYFSSRTGRTIDWDF+V+G T+EVKM GKL+VN+ DAYV CALQGFG+VQAPLYM+ Sbjct: 190 VHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQAPLYMVTRH 249 Query: 181 LEDGRLVEILSQWKPVPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPLQKGCQMGMAD 240 +++GRLVE+LSQWKP PMPISVVYLHNRHLSPKVRAFVDWVAELFATCPL K C MGM Sbjct: 250 IDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPLHKACTMGM-- 307 Query: 241 EPKESQFTSKPESNTIRAVIEQHNIAESVF 270 E E +F K E++T+R V+EQ+NIAESVF Sbjct: 308 EESECRFVDKAETSTVRNVVEQYNIAESVF 337 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 3 ILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYTKYPDIELVMGMSDRP 62 +L E + F + + GRLR+D+ +++ R ++LP L F K+P +E+ + SDR Sbjct: 72 LLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLEIELSASDRR 131 Query: 63 VDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHTIEDLQNHKSVH 122 VD+V E DCV+R G L DSS+VAR IG + C SP Y R+G P T+EDL H+ VH Sbjct: 132 VDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLEDLAQHRLVH 191 Query: 123 YFSSRTGRTIDWDFMVDGATQEVKMAGKLSVNDGDAYVACALQGFGLVQAPLYMIQP--F 180 Y GR+ W++ T+ + MAG ++VN + Y A L G GL+Q PL Q Sbjct: 192 YRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLGLIQLPLVGAQKRQM 251 Query: 181 LEDGRLVEILSQWKPVPMPISVVYLHNRHLSPKVRAFVDWVAELF 225 L+ G +VE+L Q++P PMP+S++Y RH+ ++ F+DW+ L Sbjct: 252 LDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMDWLHALI 296 >gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 188 bits (478), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 150/222 (67%), Gaps = 3/222 (1%) Query: 2 RILAEVDETEASFRNVTRG-PQGRLRIDVPASIGRLLLLPNLCDFYTKYPDIELVMGMSD 60 R++ ++++ + SF N RG P+G+LRIDV S R +L+P L DF +YPDI + +G+SD Sbjct: 71 RLVRDLEDIDTSF-NAARGNPRGKLRIDVGGSTARDVLIPALPDFLARYPDISIDLGVSD 129 Query: 61 RPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHTIEDLQN-HK 119 RPVD++ ++VDCVIR G L +SS+VAR+IG + VTC +P Y ++ G+P ++L+N H+ Sbjct: 130 RPVDLIGDSVDCVIRGGPLDNSSLVARQIGQARMVTCATPAYLKQFGVPAYPDELKNGHR 189 Query: 120 SVHYFSSRTGRTIDWDFMVDGATQEVKMAGKLSVNDGDAYVACALQGFGLVQAPLYMIQP 179 + Y S ++GR + F G E+K ++ VN+ +A++A AL G G+VQ Y P Sbjct: 190 LISYLSPQSGRAFPFRFERKGEKIEIKTEHRIGVNESNAHLAAALAGLGIVQTFRYAAGP 249 Query: 180 FLEDGRLVEILSQWKPVPMPISVVYLHNRHLSPKVRAFVDWV 221 L G LVEIL++W+P P P VVY +NRH+S ++R F+DW+ Sbjct: 250 ALARGELVEILTKWRPAPYPFHVVYPNNRHVSHRLRVFIDWL 291 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 141 bits (356), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 2 RILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYTKYPDIELVMGMSDR 61 +I+A ++E + + + P G LRI+ P + G L L P F ++P+I L + +SDR Sbjct: 71 QIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDR 130 Query: 62 PVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHTIEDLQNHKSV 121 VD++ E D IR+ L DS++V R++ + C SP Y + HG P +L H+++ Sbjct: 131 IVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTI 190 Query: 122 HYFSSRTGRTIDWDFMVDGATQEVKMAGKLSVNDGDAYVACALQGFGLVQAPLYMIQPFL 181 Y +++ +W F V+++ +L VN+GD+ V AL G G+ + P +MI +L Sbjct: 191 SYSYNQSKD--EWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYL 248 Query: 182 EDGRLVEILSQWKPVPMPISVVYLHNRHLSPKVRAFVDWVAELFA 226 G+LV IL + + I VY HL K+RA +D++ E FA Sbjct: 249 RSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFA 293 >gi|300310408|ref|YP_003774500.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 128 bits (321), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 10/212 (4%) Query: 21 PQGRLRIDVPASIGRLLLLPNLCDFYTKYPDIELVMGMSDRPVDMVQEAVDCVIRVGDLQ 80 P G L + G++ +LP + ++ YP + DRPV++V+E +D +R+G L Sbjct: 90 PSGTLSVTAALLFGQMHVLPIVTEYLDLYPGMRARTFFIDRPVNIVEEGMDVAVRIGHLP 149 Query: 81 DSSMVARRIGTFQAVTCGSPTYFERHGMPHTIEDLQNHKSVHYFSSRTGRTIDWDFMVDG 140 DS A ++G+ + V C +P Y RHG+P + DL+ H+ V S+ + +W F DG Sbjct: 150 DSGFTAIQVGSVRRVICAAPDYLRRHGVPTSPADLKQHRIVT--STSAWASPEWRF-ADG 206 Query: 141 ATQEVKMAGKLSVNDGDAYVACALQGFGLVQAPLYMIQPFLEDGRLVEILSQWKPVPMPI 200 Q V + L N +A +A A QG+GL + Y + L+ GRL ++S+++ P+PI Sbjct: 207 --QRVLVEAALQTNTNEAAIATARQGWGLTRVLAYQVAADLQAGRLQRVMSEFEEPPLPI 264 Query: 201 SVVYLHNRHLSPKVRAFVDWVAELFATCPLQK 232 V+Y R KVRAF+D A C L++ Sbjct: 265 HVLYPEGRRSPAKVRAFID-----LAVCRLRE 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 821,219 Number of extensions: 33387 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 29 Length of query: 270 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 186 Effective length of database: 1,222,130 Effective search space: 227316180 Effective search space used: 227316180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)