BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0245.0031.p
         (533 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...   750   0.0  

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/490 (76%), Positives = 419/490 (85%), Gaps = 4/490 (0%)

Query: 36  MNTTSFRDEWLSNGKANVLAGLTSSFALVPECIAFALVAQLNPLMGLYGAFFICTLTALF 95
           M T +     L + + NVLAGLT+SFALVPECIAFALVAQLNPLMGLYGAFFICT+TALF
Sbjct: 8   MTTITTPTSRLRDLRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICTITALF 67

Query: 96  GGRPGMISGAAGSMAVVIVALVAQHGAQYFLLTVVLSGALMLLFGALRLGKLIRMVPHPV 155
           GGRPGMISGAAGSMAVVIVALV QHGAQYFL TVVLSG +ML FGALRLGKL+RMVPHPV
Sbjct: 68  GGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRMVPHPV 127

Query: 156 MLGFVNGLAIVIAMAQFEHFKQTDASGTHWLHGAPLLIMVALVAVTMLIVYLLPRLTRX- 214
           MLGFVNGLAIVIA++Q EHF+   A+GT WL G+ L +M+AL   TMLIV+LLPR+T+  
Sbjct: 128 MLGFVNGLAIVIALSQLEHFRIATAAGTQWLQGSALWVMIALTLATMLIVWLLPRVTKAV 187

Query: 215 ---LAAIVGVAVLSQVTGLPTRTLGDMAHIAGGLPIWHFPEVPLTLETLRIVAPYAVLMA 271
              LAAI+GV +++  +GL TRTL DMA IAGGLP  H P VPLTLETLRI+ PYAVLMA
Sbjct: 188 PPALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIGPYAVLMA 247

Query: 272 VVGLLETLLTLNLTDEITETRGQANRECLALGVANVVSGLFGGMGGCAMIGQTMINLSSG 331
           +VGLLETLLT NLTDEIT TRGQ NRECLALG AN+VSGLFGGMGGCAMIGQTMINL SG
Sbjct: 248 IVGLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQTMINLGSG 307

Query: 332 GRSRLSGVVSGVMILLFILFLSPLIERIPLAALVGVMFVVAQQTFAWGSLRVLGKVPRND 391
           GRSRLSGVV+GVMILLFILFLSP IERIPLAAL GVMFVVAQ+TFAWGSLRVLGKVPR+D
Sbjct: 308 GRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGKVPRSD 367

Query: 392 ALVIVAVTVITVFTDLAVAVLCGIVIAALNFAWQHAREIRADISESGDGEKTYVPHGTLF 451
           ALVI+AVTVITV TDLAVAVLCGIVIAALNFAWQHARE+R+D+ +  DG +TY+PHGTLF
Sbjct: 368 ALVIIAVTVITVLTDLAVAVLCGIVIAALNFAWQHAREVRSDVRDEDDGSRTYLPHGTLF 427

Query: 452 FASTAHFQELFDPAQDPLRVVVDCRHLHLADHSAIAALEALSERYTRAGKHLRLAHLSRR 511
           FAST HF  LFD   DP  V +DCRHL LADHSAIAA++ L+ERYTR GK LR+  LS+R
Sbjct: 428 FASTTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLRVVALSQR 487

Query: 512 SRQLLQRVGM 521
             QLLQR G+
Sbjct: 488 CSQLLQRAGL 497


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,503,526
Number of extensions: 57442
Number of successful extensions: 294
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,193,720
Effective search space: 528817960
Effective search space used: 528817960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)